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[190430_at] Zinc finger, C2H2 type

Description ZK892.7 /REP_DB=WormBase Gene ID /WP=CE01729 /TR=Q09620 /GB=CAA88569.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 39      4grp_total > 07      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 44.4
(1.5)
A 		25.1
(-3)
A 		51.1
(3)
A 		40.6
(0.6)
A 		26
B 55.7
(1.3)
A 		22.6
(-3)
A 		69.3
(3)
A 		58.8
(1.7)
A 		47
C 20.9
(-3)
A 		24.3
(-0.9)
A 		28.2
(1.6)
A 		30.5
(3)
A 		10
avr 40.3
(0.8) 		24
(-3) 		49.5
(3) 		43.3
(1.5) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 41.7
(0.9)
A 		30.5
(-1.4)
A 		22.6
(-3)
A 		33.5
(-0.8)
A 		52.1
(3)
A 		49.3
(2.4)
A 		30
B 57.6
(2.2)
A 		47.4
(0.9)
A 		17.8
(-3)
A 		27.1
(-1.8)
A 		63.9
(3)
A 		54.6
(1.8)
A 		46
C 42.3
(-3)
A 		68.1
(1.2)
A 		48
(-2.1)
A 		79.4
(3)
A 		56.3
(-0.7)
A 		42.1
(-3)
A 		37
avr 47.2
(0.8) 		48.7
(1.1) 		29.5
(-3) 		46.7
(0.7) 		57.4
(3) 		48.7
(1.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 16.2
(3)
A 		5.5
(-3)
A 		13.4
(1.4)
A 		5.9
(-2.8)
A 		11
B 17.8
(3)
A 		5.6
(-3)
A 		16
(2.1)
A 		12.5
(0.4)
A 		12
C 6.9
(-0.7)
A 		7
(-0.6)
A 		9.8
(3)
A 		5.1
(-3)
A 		5
avr 13.6
(3) 		6
(-3) 		13.1
(2.6) 		7.8
(-1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.7
(-1.4)
A 		10.8
(0.3)
A 		4.9
(-3)
A 		8.5
(-1)
A 		15.7
(3)
A 		12
(0.9)
A 		11
B 20.1
(1.4)
A 		15.8
(0.2)
A 		4.3
(-3)
A 		7.2
(-2.2)
A 		26
(3)
A 		20.4
(1.5)
A 		22
C 15.7
(-0.6)
A 		20.8
(3)
A 		12.2
(-3)
A 		16
(-0.3)
A 		18.2
(1.2)
A 		14.1
(-1.7)
A 		9
avr 14.5
(0.4) 		15.8
(1) 		7.1
(-3) 		10.6
(-1.4) 		20
(3) 		15.5
(0.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4005
Sequence Type Exemplar sequence
Representative Public ID ZK892.7 NCBI
Target Description ZK892.7 /REP_DB=WormBase Gene ID /WP=CE01729 /TR=Q09620 /GB=CAA88569.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063757 NCBI Caenorhabditis elegans ZK892.7 (ZK892.7) mRNA, complete cds. 11/11 None
SNAP00000002391 ENSEMBL cdna:SNAP chromosome:CEL140:II:9980923:9981580:-1 9/11 None
GENEFINDER00000002399 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9980923:9981658:-1 11/11 None
ZK892.7 ENSEMBL cdna:known chromosome:CEL140:II:9980923:9981658:-1 gene:ZK892.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9980919-9981655(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol sdz-38
Ensembl ZK892.7
Entrez Gene 191448 Entrez gene
SwissProt Q09620 EMBL-EBI
WormBase CE01729 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88569 Hypothetical protein ZK892.7 [Caenorhabditis elegans] ref|NP_496158.1| ZK892.7 [Caenorhabditis elegans] 1.0E-118
blast CAA88569 Hypothetical protein ZK892.7 [Caenorhabditis elegans] ref|NP_496158.1| ZK892.7 [Caenorhabditis elegans] 1.0E-101
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 2.0E-18
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:190430_AT
gaagcaccaatctgcggttactgtcaacttacattcagtcaaacgggctcaatgactcgc
catagggacagacttcacaccaagaatcacacgtgtctcatctgcgtctcaaactgtgaa
ggtgctccgattctgggagaaagtataaagaagcacttgcaacatgctcatggatatgta
gatgtacagtcgtgtagttgttgccattggatttttgagaacaaaattcaactgagaact
catttggacgcaatgaaagcaactgggcagccaggagacgaggtggtactagccaagggt
acatttgcaccaggaacactatcacaagcagctattctccaatccaaagcctactctgcc
aatcgacagcaaaaatgtcagcaatcactgaaagttgactctggaggattcaatgattta
tcggaaacacaactcaaattcattttggacaactactcacagattgttggagaactggaa
tctcccaatcctaaaatcagtggatgcagaaagcgaaaatgtggaatgacaatccagcat
gtccttcgagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCACCAATCTGCGGTTACTGTC 224 329 40 Antisense
CAAACGGGCTCAATGACTCGCCATA 616 191 79 Antisense
GACTCGCCATAGGGACAGACTTCAC 267 375 93 Antisense
AGAATCACACGTGTCTCATCTGCGT 669 75 122 Antisense
AACTGTGAAGGTGCTCCGATTCTGG 175 143 151 Antisense
CAGTCGTGTAGTTGTTGCCATTGGA 526 207 226 Antisense
GCACCAGGAACACTATCACAAGCAG 189 315 346 Antisense
GCAGCTATTCTCCAATCCAAAGCCT 679 313 367 Antisense
CCTACTCTGCCAATCGACAGCAAAA 361 269 389 Antisense
AGAACTGGAATCTCCCAATCCTAAA 565 71 510 Antisense
GACAATCCAGCATGTCCTTCGAGAC 352 365 567 Antisense
Sequence Source Affymetrix Proprietary Database