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[190427_s_at] ferritin heavy chain

Description C54F6.14 /REP_DB=WormBase Gene ID /WP=CE08986 /TR=O16453 /GB=AAG24016.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ferritin heavy chain
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 69      6grp_total > 96      4grp_total > 10      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2949
1 2 3 4 range
A 565
(-3)
P 		837.4
(-2.4)
P 		589.3
(-3)
P 		3513.6
(3)
P 		2949
B 630.1
(-2.9)
P 		811.1
(-2.5)
P 		597.8
(-3)
P 		3086.5
(3)
P 		2489
C 568
(-3)
P 		801.4
(-2.4)
P 		615.6
(-2.9)
P 		2841
(3)
P 		2273
avr 587.7
(-3) 		816.6
(-2.5) 		600.9
(-3) 		3147
(3) 		2559

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3882
1 2 3 4 5 6 range
A 538.3
(-3)
P 		1189.4
(-2)
P 		777.2
(-2.6)
P 		2526.7
(0.1)
P 		3209.9
(1.1)
P 		4418.9
(3)
P 		3881
B 536.7
(-3)
P 		1002.1
(-2.1)
P 		904.6
(-2.3)
P 		1599.4
(-1.1)
P 		3553.6
(2.5)
P 		3820
(3)
P 		3283
C 667.9
(-3)
P 		1114.9
(-2.2)
P 		836.6
(-2.7)
P 		2473
(0.2)
P 		3407
(1.8)
P 		4103.8
(3)
P 		3436
avr 581
(-3) 		1102.1
(-2.1) 		839.5
(-2.6) 		2199.7
(-0.3) 		3390.2
(1.8) 		4114.2
(3) 		3533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 205.7
(-2.1)
P 		181.8
(-2.5)
P 		154
(-3)
P 		514.3
(3)
P 		360
B 200.9
(-2.3)
P 		200.3
(-2.3)
P 		138.5
(-3)
P 		657.7
(3)
P 		519
C 188
(-3)
P 		230.4
(-2.1)
P 		214.6
(-2.5)
P 		479
(3)
P 		291
avr 198.2
(-2.5) 		204.2
(-2.4) 		169
(-3) 		550.3
(3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1345
1 2 3 4 5 6 range
A 99.2
(-3)
P 		423
(-1)
P 		169.3
(-2.6)
P 		640.8
(0.3)
P 		968.6
(2.3)
P 		1075.9
(3)
P 		977
B 186.7
(-3)
P 		333.6
(-2.3)
P 		219.7
(-2.8)
P 		423.6
(-1.9)
P 		1443.8
(3)
P 		1424.4
(2.9)
P 		1257
C 247.6
(-2.8)
P 		340.2
(-2.3)
P 		212.9
(-3)
P 		497.3
(-1.5)
P 		1102.4
(1.6)
P 		1373.8
(3)
P 		1161
avr 177.8
(-3) 		365.6
(-2) 		200.6
(-2.9) 		520.6
(-1.2) 		1171.6
(2.4) 		1291.4
(3) 		1114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190427_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12329
Sequence Type Exemplar sequence
Representative Public ID C54F6.14 NCBI
Target Description C54F6.14 /REP_DB=WormBase Gene ID /WP=CE08986 /TR=O16453 /GB=AAG24016.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ferritin heavy chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072543 NCBI Caenorhabditis elegans FerriTiN family member (ftn-1) (ftn-1) mRNA, complete cds. 11/11 None
SNAP00000031627 ENSEMBL cdna:SNAP chromosome:CEL140:V:7549137:7550155:-1 11/11 None
GENEFINDER00000031632 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7549137:7550155:-1 11/11 None
C54F6.14 ENSEMBL cdna:known chromosome:CEL140:V:7549127:7550217:-1 gene:C54F6.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7549137-7550156(-) 100.0 100.0
Public Domain and Genome References
Gene Title ferritin heavy chain
Gene Symbol ftn-1
Ensembl C54F6.14
Entrez Gene 179138 Entrez gene
SwissProt O16453 EMBL-EBI
WormBase CE08986 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16031_AT ferritin 1 (FER1) at
ATH1-121501:251109_AT ferritin 1 (FER1) at
CHICKEN:GGA.4390.2.S1_A_AT ferritin, heavy polypeptide 1 gga
CHICKEN:GGA.4390.4.S1_A_AT ferritin, heavy polypeptide 1 gga
CHICKEN:GGA.4390.4.S1_S_AT ferritin, heavy polypeptide 1 gga
HG-U133_PLUS_2:200748_S_AT ferritin, heavy polypeptide 1 hs
HG-U133A:200748_S_AT ferritin, heavy polypeptide 1 hs
HG-FOCUS:200748_S_AT ferritin, heavy polypeptide 1 hs
HG-U133A_2:200748_S_AT ferritin, heavy polypeptide 1 hs
HU35KSUBD:RC_AA351162_S_AT ferritin, heavy polypeptide 1 hs
HU35KSUBD:RC_D51109_F_AT ferritin, heavy polypeptide 1 hs
HUGENEFL:L20941_AT ferritin, heavy polypeptide 1 hs
U133_X3P:G4503794_3P_S_AT ferritin, heavy polypeptide 1 hs
U133_X3P:HS.62954.5.A1_3P_X_AT ferritin, heavy polypeptide 1 hs
U133_X3P:200748_3P_S_AT ferritin, heavy polypeptide 1 hs
HG-U133A_2:214211_AT ferritin, heavy polypeptide 1 hs
HG-U133_PLUS_2:214211_AT ferritin, heavy polypeptide 1 hs
HG-U133A:214211_AT ferritin, heavy polypeptide 1 hs
HG-U95AV2:31697_S_AT ferritin, heavy polypeptide 1 hs
HG-U95AV2:33943_AT ferritin, heavy polypeptide 1 hs
HU35KSUBC:RC_W86214_AT Ferritin, heavy polypeptide 1 hs
HG-U95B:48372_AT Ferritin, heavy polypeptide 1 hs
MG-U74AV2:94794_AT ferritin heavy chain 1 mm
MU11KSUBA:J03941_F_AT ferritin heavy chain 1 mm
MU11KSUBA:M24509_F_AT ferritin heavy chain 1 mm
MU11KSUBB:MSA.643.0_F_AT ferritin heavy chain 1 mm
MG-U74CV2:168912_F_AT ferritin heavy chain 1 mm
MOE430A:1427021_S_AT ferritin heavy chain 1 mm
MOUSE430A_2:1427021_S_AT ferritin heavy chain 1 mm
MOUSE430_2:1427021_S_AT ferritin heavy chain 1 mm
MOE430A:1448771_A_AT ferritin heavy chain 1 mm
MOUSE430A_2:1448771_A_AT ferritin heavy chain 1 mm
MOUSE430_2:1448771_A_AT ferritin heavy chain 1 mm
MU19KSUBA:TC14212_F_AT Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821) mm
MU19KSUBA:TC14213_AT Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821) mm
MU19KSUBA:TC14214_AT Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821) mm
MU19KSUBC:TC35865_F_AT Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821) mm
MU19KSUBC:TC35866_AT Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821) mm
RG-U34A:RC_AI169802_AT ferritin, heavy polypeptide 1 rn
RG-U34B:RC_AA963209_AT ferritin, heavy polypeptide 1 rn
RAE230A:1367565_A_AT ferritin, heavy polypeptide 1 rn
RAT230_2:1367565_A_AT ferritin, heavy polypeptide 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6826 iron ion transport inferred from electronic annotation QuickGO AmiGO
6879 iron ion homeostasis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8199 ferric iron binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504944 FerriTiN family member (ftn-1) [Caenorhabditis elegans] gb|AAG24016.1| Ferritin protein 1 [Caenorhabditis elegans] 7.0E-81
blast CAE57802 Hypothetical protein CBG00826 [Caenorhabditis briggsae] 2.0E-71
blast AAK21364 Ferritin protein 2 [Caenorhabditis elegans] ref|NP_491198.1| D1037.3 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR008331 EMBL-EBI Ferritin and Dps 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:190427_S_AT
gtctctagctcgtcaaaactatcacgatgaagtcgaagcggccgtcaataaacagattaa
cgtagaactctacgcctcctatgtctatctatcgatgtctgcacacttcgatcgtgatga
tatcgcacttcggaacattgccaaatttttcaaggagcaatcggatgaggagcgtggcca
tgccacagagctcatgagaattcaagctgtccgtggaggacgtgttgccatgcagaacat
tcagaagccagagaaagacgagtggggaactgtccttgaagcatttgaagccgcacttgc
tctagagagagccaataatgcatctttgttgaagcttcatggaatcgccgaacaacgcaa
tgacgcgcacttgacaaattacattcaggagaagtatttggaagagcaggtacattcgat
caatgaatttgctcgccacattgcaaatatcaagagagccggcccaggactcggagaata
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTAGCTCGTCAAAACTATCAC 141 471 15 Antisense
ACGTAGAACTCTACGCCTCCTATGT 498 93 74 Antisense
GCCTCCTATGTCTATCTATCGATGT 179 283 88 Antisense
GATGTCTGCACACTTCGATCGTGAT 468 409 108 Antisense
GATATCGCACTTCGGAACATTGCCA 601 425 133 Antisense
GAGCGTGGCCATGCCACAGAGCTCA 316 387 184 Antisense
GTCCGTGGAGGACGTGTTGCCATGC 248 477 223 Antisense
TTGAAGCCGCACTTGCTCTAGAGAG 97 705 299 Antisense
GAAGCTTCATGGAATCGCCGAACAA 10 343 345 Antisense
AACGCAATGACGCGCACTTGACAAA 132 145 368 Antisense
AGCCGGCCCAGGACTCGGAGAATAT 25 83 471 Antisense
Sequence Source Affymetrix Proprietary Database