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[190425_at] haemoglobinase like

Description T05E11.6 /REP_DB=WormBase Gene ID /WP=CE13247 /TR=SW:P49048 /GB=CAA92977.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=haemoglobinase like
Cluster 4grp_high_8_8 > 20      6grp_total > 09      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 57.2
(-3)
P 		92.9
(3)
P 		71.7
(-0.6)
P 		88
(2.2)
M 		36
B 88
(1.8)
P 		84.5
(-0.6)
P 		81.1
(-3)
A 		89.7
(3)
P 		9
C 59.3
(-2.4)
A 		55.9
(-3)
P 		61.4
(-2)
P 		90.5
(3)
P 		35
avr 68.2
(-3) 		77.8
(-0.3) 		71.4
(-2.1) 		89.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 76.3
(3)
A 		27.9
(-1)
A 		39.1
(-0.1)
A 		75.4
(2.9)
A 		75.8
(3)
P 		4.5
(-3)
A 		72
B 63.3
(3)
P 		29.1
(-3)
A 		50.4
(0.7)
A 		34.3
(-2.1)
P 		39.2
(-1.2)
M 		36.1
(-1.8)
A 		34
C 69.5
(-0.5)
P 		56
(-1.5)
A 		113.9
(3)
A 		77.1
(0.1)
P 		37
(-3)
P 		67.2
(-0.6)
A 		77
avr 69.7
(3) 		37.7
(-2.7) 		67.8
(2.7) 		62.3
(1.7) 		50.7
(-0.4) 		35.9
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 20.8
(3)
P 		20.2
(2.5)
P 		18.7
(1.4)
P 		12.9
(-3)
M 		8
B 28.1
(3)
P 		20.9
(-1.6)
P 		18.8
(-3)
A 		19.1
(-2.8)
P 		9
C 19.6
(1.2)
A 		16.1
(-2.2)
P 		21.4
(3)
P 		15.3
(-3)
P 		6
avr 22.8
(3) 		19.1
(-0.2) 		19.6
(0.3) 		15.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.1
(0.6)
A 		9.9
(-0.6)
A 		8.5
(-1)
A 		19.1
(2)
A 		22.9
(3)
P 		1.1
(-3)
A 		22
B 22
(3)
P 		9.7
(-2.7)
A 		12.2
(-1.6)
A 		9.1
(-3)
P 		15.9
(0.2)
M 		13.5
(-1)
A 		13
C 25.8
(1.9)
P 		17.1
(-1.2)
A 		29
(3)
A 		15.5
(-1.8)
P 		12
(-3)
P 		22.5
(0.7)
A 		17
avr 20.6
(3) 		12.2
(-3) 		16.6
(0.1) 		14.6
(-1.3) 		16.9
(0.4) 		12.4
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10025
Sequence Type Exemplar sequence
Representative Public ID T05E11.6 NCBI
Target Description T05E11.6 /REP_DB=WormBase Gene ID /WP=CE13247 /TR=SW:P49048 /GB=CAA92977.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=haemoglobinase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069675 NCBI Caenorhabditis elegans T05E11.6 (T05E11.6) mRNA, complete cds. 11/11 None
SNAP00000031859 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11108621:11109973:-1 11/11 None
GENEFINDER00000031868 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11108621:11109653:-1 11/11 None
T05E11.6 ENSEMBL cdna:known chromosome:CEL140:IV:11108621:11110040:-1 gene:T05E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11108626-11110046(-) 100.0 100.0
Public Domain and Genome References
Gene Title haemoglobinase like
Ensembl T05E11.6
Entrez Gene 188131 Entrez gene
SwissProt P49048 EMBL-EBI
WormBase CE13247 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264810_AT GPI-anchor transamidase, putative at
ATGENOME1:15710_AT GPI-anchor transamidase, putative at
CANINE:1587380_AT similar to GPI-anchor transamidase precursor (GPI transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) (hGPI8) cfa
CANINE_2:CFA.2148.1.S1_AT similar to GPI-anchor transamidase precursor (GPI transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) (hGPI8) cfa
CANINE_2:CFAAFFX.31211.1.S1_S_AT similar to GPI-anchor transamidase precursor (GPI transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) (hGPI8) cfa
DROSOPHILA_2:1637390_AT dm
DROSGENOME1:144003_AT dm
CHICKEN:GGAAFFX.5695.1.S1_AT phosphatidylinositol glycan, class K gga
HU35KSUBA:RC_AA481761_AT phosphatidylinositol glycan, class K hs
HU35KSUBB:RC_N89829_AT phosphatidylinositol glycan, class K hs
HUGENEFL:Y07596_AT phosphatidylinositol glycan, class K hs
HG-U133A:209707_AT phosphatidylinositol glycan, class K hs
HG-U133_PLUS_2:209707_AT phosphatidylinositol glycan, class K hs
HG-U133A_2:209707_AT phosphatidylinositol glycan, class K hs
U133_X3P:G2558890_3P_AT phosphatidylinositol glycan, class K hs
U133_X3P:HS2AFFX.1.261.S1_3P_AT phosphatidylinositol glycan, class K hs
U133_X3P:HS.293653.0.A1_3P_AT phosphatidylinositol glycan, class K hs
HG-U133_PLUS_2:1555394_AT phosphatidylinositol glycan, class K hs
HG-U133_PLUS_2:227639_AT phosphatidylinositol glycan, class K hs
HG-U133B:227639_AT phosphatidylinositol glycan, class K hs
HG-U95AV2:40305_R_AT phosphatidylinositol glycan, class K hs
HG-U95B:57713_AT phosphatidylinositol glycan, class K hs
HG-U95D:79435_AT phosphatidylinositol glycan, class K hs
MG-U74AV2:160105_R_AT phosphatidylinositol glycan, class K mm
MG-U74BV2:110655_AT phosphatidylinositol glycan, class K mm
MG-U74BV2:113912_AT phosphatidylinositol glycan, class K mm
MG-U74CV2:170789_R_AT phosphatidylinositol glycan, class K mm
MOE430A:1452801_AT phosphatidylinositol glycan, class K mm
MOUSE430A_2:1452801_AT phosphatidylinositol glycan, class K mm
MOUSE430_2:1452801_AT phosphatidylinositol glycan, class K mm
MOE430A:1428488_AT phosphatidylinositol glycan, class K mm
MOUSE430A_2:1428488_AT phosphatidylinositol glycan, class K mm
MOUSE430_2:1428488_AT phosphatidylinositol glycan, class K mm
MOE430A:1435352_AT phosphatidylinositol glycan, class K mm
MOUSE430A_2:1435352_AT phosphatidylinositol glycan, class K mm
MOUSE430_2:1435352_AT phosphatidylinositol glycan, class K mm
MU19KSUBB:TC34308_AT Phosphatidylinositol glycan, class K, mRNA (cDNA clone MGC:61259 IMAGE:6827521) mm
MU19KSUBC:TC39353_AT Phosphatidylinositol glycan, class K, mRNA (cDNA clone MGC:61259 IMAGE:6827521) mm
RG-U34C:RC_AI236743_AT phosphatidylinositol glycan, class K (predicted) rn
RAE230A:1373101_AT phosphatidylinositol glycan, class K (predicted) rn
RAT230_2:1373101_AT phosphatidylinositol glycan, class K (predicted) rn
YEAST_2:1769721_AT ER membrane glycoprotein subunit of the glycosylphosphatidylinositol transamidase complex that adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1509 legumain activity inferred from electronic annotation QuickGO AmiGO
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE62002 Hypothetical protein CBG06010 [Caenorhabditis briggsae] 1.0E-177
blast CAA92977 Hypothetical protein T05E11.6 [Caenorhabditis elegans] ref|NP_502076.1| T05E11.6 [Caenorhabditis elegans] sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase (GPI transamidase) 1.0E-170
blast CAA92977 Hypothetical protein T05E11.6 [Caenorhabditis elegans] ref|NP_502076.1| T05E11.6 [Caenorhabditis elegans] sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase (GPI transamidase) 1.0E-163
blast CAE62002 Hypothetical protein CBG06010 [Caenorhabditis briggsae] 1.0E-160
blast CAA92977 Hypothetical protein T05E11.6 [Caenorhabditis elegans] ref|NP_502076.1| T05E11.6 [Caenorhabditis elegans] sp|P49048|GPI8_CAEEL Putative GPI-anchor transamidase (GPI transamidase) 1.0E-135
blast CAE62002 Hypothetical protein CBG06010 [Caenorhabditis briggsae] 1.0E-132
blast XP_394531 PREDICTED: similar to ENSANGP00000013498 [Apis mellifera] 5.0E-90
blast XP_785235 PREDICTED: similar to phosphatidylinositol glycan, class K (predicted) [Strongylocentrotus purpuratus] 7.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR001096 EMBL-EBI Peptidase C13, legumain 5.7E-110
Pfam IPR001096 EMBL-EBI Peptidase C13, legumain 5.2E-112
Pfam IPR001096 EMBL-EBI Peptidase C13, legumain 3.6E-77
Sequence
Target Sequence 
>C. ELEGANS:190425_AT
tgaaagcttcatccgcgttttgacaggacgtcatcatccggcgacacctcgttcaaaaag
actgctcaccgaccatcagagcaatgttctgatttatctcactggccacggaggagacag
tttcatgaaattccaagattctgaagagctcaccaacgttgatttggcgtatgctattca
aacgatgttcgaggataaccggtatcacgaaatgcttgtaattgctgatagttgccgaag
tgcttcaatgtatgaatggattgattcaccaaatgtactgagtctttctagcagtttgac
acacgaagagagctattcttacgatgtggatacagatatcggagtttacgttatcgatag
atacacccattacactgttaacttcctaacaaaagaagtgaaagcattgaattcgtctgc
gaatatgcaagattatattgattcttgtccagctagaaaatgtctatcaaatacaggcgt
tcgaaaagatcattatccgaaagatgtgaaacgagttcgcgtgaccgacttctttggatc
atcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAGCTTCATCCGCGTTTTGACA 233 573 381 Antisense
TTGACAGGACGTCATCATCCGGCGA 292 703 400 Antisense
TCCGGCGACACCTCGTTCAAAAAGA 660 589 417 Antisense
TTCAAAAAGACTGCTCACCGACCAT 59 685 432 Antisense
TGTTCTGATTTATCTCACTGGCCAC 72 563 465 Antisense
GGCCACGGAGGAGACAGTTTCATGA 437 543 484 Antisense
GATTCTGAAGAGCTCACCAACGTTG 277 427 517 Antisense
GAGTCTTTCTAGCAGTTTGACACAC 85 401 660 Antisense
ACACCCATTACACTGTTAACTTCCT 616 107 743 Antisense
GAAACGAGTTCGCGTGACCGACTTC 386 357 888 Antisense
GTGACCGACTTCTTTGGATCATCAA 242 481 901 Antisense
Sequence Source Affymetrix Proprietary Database