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[190421_at] transpanin

Description D2092.7 /REP_DB=WormBase Gene ID /WP=CE25838 /GEN=tsp-19 /TR=P91195 /GB=AAB42228.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_total > 88      4grp_total > 10      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 5.6
(-3)
A 		8
(-2.9)
A 		5.5
(-3)
A 		186.4
(3)
A 		181
B 17.2
(-3)
A 		23.4
(-1.5)
A 		18.9
(-2.6)
A 		42.6
(3)
A 		25
C 8.9
(-2.7)
A 		18.1
(-2.3)
A 		1.8
(-3)
A 		149
(3)
P 		147
avr 10.6
(-2.9) 		16.5
(-2.6) 		8.7
(-3) 		126
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 2
(-3)
A 		3.2
(-2.8)
A 		38.1
(3)
A 		7.3
(-2.1)
A 		36.5
(2.7)
M 		24.4
(0.7)
A 		36
B 29.5
(-0.5)
A 		9.4
(-3)
A 		14
(-2.4)
A 		35.1
(0.2)
A 		57.8
(3)
P 		55.1
(2.7)
P 		48
C 22.7
(-1.5)
A 		48.1
(0.9)
A 		6.1
(-3)
A 		24.8
(-1.3)
A 		17.1
(-2)
A 		70.4
(3)
A 		64
avr 18.1
(-3) 		20.2
(-2.6) 		19.4
(-2.8) 		22.4
(-2.2) 		37.1
(0.6) 		50
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2.1
(-2.8)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		27.3
(3)
A 		26
B 5.5
(-1.6)
A 		5.8
(-1.2)
A 		4.4
(-3)
A 		9.1
(3)
A 		5
C 2.9
(-2.4)
A 		5.2
(-1.9)
A 		0.6
(-3)
A 		25.1
(3)
P 		25
avr 3.5
(-2.5) 		4.2
(-2.3) 		2.1
(-3) 		20.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.2
(-2.5)
A 		8.3
(1.5)
A 		1.8
(-2.2)
A 		11
(3)
M 		5.9
(0.1)
A 		11
B 10.3
(-0.9)
A 		3.1
(-3)
A 		3.4
(-2.9)
A 		9.3
(-1.2)
A 		23.5
(3)
P 		20.6
(2.1)
P 		20
C 8.4
(-1.1)
A 		14.7
(0.6)
A 		1.5
(-3)
A 		5
(-2)
A 		5.5
(-1.9)
A 		23.6
(3)
A 		22
avr 6.4
(-2) 		6.3
(-2.1) 		4.4
(-3) 		5.4
(-2.5) 		13.3
(1.3) 		16.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.405
Sequence Type Exemplar sequence
Representative Public ID D2092.7 NCBI
Target Description D2092.7 /REP_DB=WormBase Gene ID /WP=CE25838 /GEN=tsp-19 /TR=P91195 /GB=AAB42228.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059503 NCBI Caenorhabditis elegans D2092.7 (transpanin) mRNA, complete cds. 11/11 None
SNAP00000030847 ENSEMBL cdna:SNAP chromosome:CEL140:I:6624438:6626676:1 10/11 None
GENEFINDER00000030862 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6624438:6626676:1 11/11 None
D2092.7 ENSEMBL cdna:known chromosome:CEL140:I:6624730:6626676:1 gene:D2092.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6624658-6626605(+) 100.0 100.0
Public Domain and Genome References
Gene Title transpanin
Gene Symbol tsp-19
Ensembl D2092.7
Entrez Gene 192069 Entrez gene
SwissProt P91195 EMBL-EBI
WormBase CE25838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42228 Tetraspanin family protein 19 [Caenorhabditis elegans] ref|NP_491904.1| D2092.7 [Caenorhabditis elegans] 0.0
blast AAB42228 Tetraspanin family protein 19 [Caenorhabditis elegans] ref|NP_491904.1| D2092.7 [Caenorhabditis elegans] 1.0E-176
blast CAE67244 Hypothetical protein CBG12684 [Caenorhabditis briggsae] 1.0E-128
blast CAE67244 Hypothetical protein CBG12684 [Caenorhabditis briggsae] 1.0E-126
blast CAE67244 Hypothetical protein CBG12684 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491904.1 4 24-46,66-85,92-114,307-329
D2092.7 4 24-46,66-85,92-114,307-329
SNAP00000030847 4 74-96,116-135,142-164,305-327
GENEFINDER00000030862 4 74-96,116-135,142-164,326-348
Sequence
Target Sequence 
>C. ELEGANS:190421_AT
gtgactcgggaattctcaatctacgaatatcacttctacagtattccgatgtcgtgctgc
cgaaaatttgatggggttgtgtgttctcaacgtaatctgacatctgaagaaacgcaagaa
gtgcggaaatatgcagaagttggaaaatgggatttgatgctcaagtactttgtcatgcca
gaattaggtttgtattggtcaagaggatgtctgacggaatacgtggattcaattgaaact
tatattactgtattgatttcaactcttgtcatttttgctttgttcactgcgttgactatc
ggatttgttattgttcttttattgtatgaggatggaatcgggcacattgtatcagataca
aaaatgttcggagttgaaagaaatacgggagttcattttttgatgagcttggatatgatg
aacagtgatttccaggatgactttagtttgattgaattccttcgaaacactgatattgat
cgctttgtagctggtgataaactcggggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTCGGGAATTCTCAATCTACG 23 483 676 Antisense
AATCTACGAATATCACTTCTACAGT 474 169 693 Antisense
TATTCCGATGTCGTGCTGCCGAAAA 226 665 717 Antisense
GTGTTCTCAACGTAATCTGACATCT 666 485 756 Antisense
GATGCTCAAGTACTTTGTCATGCCA 379 413 831 Antisense
GTATTGATTTCAACTCTTGTCATTT 253 453 925 Antisense
GTCATTTTTGCTTTGTTCACTGCGT 460 467 943 Antisense
GTTCACTGCGTTGACTATCGGATTT 56 445 957 Antisense
GGATGGAATCGGGCACATTGTATCA 281 515 1005 Antisense
GAAACACTGATATTGATCGCTTTGT 530 355 1139 Antisense
GTAGCTGGTGATAAACTCGGGGACA 483 457 1162 Antisense
Sequence Source Affymetrix Proprietary Database