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[190420_at] Zinc finger, CCHC class

Description C27B7.5 /REP_DB=WormBase Gene ID /WP=CE03034 /TR=Q18244 /GB=CAA90980.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, CCHC class
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_total > 96      4grp_total > 40      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 133.8
(-3)
P 		260.5
(1.2)
P 		314.8
(3)
P 		281.8
(1.9)
P 		181
B 146.9
(-3)
P 		294.7
(3)
P 		264.2
(1.8)
P 		267.7
(1.9)
P 		148
C 143
(-3)
P 		225
(-0.2)
P 		316.3
(3)
P 		244.5
(0.5)
P 		173
avr 141.2
(-3) 		260.1
(1.5) 		298.4
(3) 		264.7
(1.7) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 138.6
(-3)
A 		186.7
(-2.5)
P 		150.9
(-2.9)
P 		304.2
(-1.3)
P 		610.5
(1.9)
P 		720.2
(3)
P 		582
B 134.7
(-2.7)
P 		107
(-3)
P 		152
(-2.5)
P 		343.9
(-0.6)
P 		704.2
(3)
P 		699
(2.9)
P 		597
C 134.4
(-3)
P 		163.4
(-2.7)
P 		231.8
(-2)
P 		274.1
(-1.5)
P 		601.8
(1.9)
P 		712.1
(3)
P 		578
avr 135.9
(-3) 		152.4
(-2.8) 		178.2
(-2.6) 		307.4
(-1.2) 		638.8
(2.3) 		710.4
(3) 		575
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 48.7
(-1.9)
P 		56.5
(-0.8)
P 		82.3
(3)
P 		41.2
(-3)
P 		41
B 46.8
(-3)
P 		72.8
(3)
P 		61.2
(0.3)
P 		57.1
(-0.6)
P 		26
C 47.3
(-2.5)
P 		64.7
(-1)
P 		110.2
(3)
P 		41.2
(-3)
P 		69
avr 47.6
(-2.8) 		64.7
(-0.1) 		84.6
(3) 		46.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 25.5
(-3)
A 		66.4
(-1.5)
P 		32.9
(-2.7)
P 		77.1
(-1)
P 		184.2
(3)
P 		175.3
(2.7)
P 		159
B 46.9
(-2.7)
P 		35.6
(-3)
P 		36.9
(-3)
P 		91.1
(-1.7)
P 		286.1
(3)
P 		260.6
(2.4)
P 		251
C 49.8
(-3)
P 		49.9
(-3)
P 		59
(-2.7)
P 		55.1
(-2.8)
P 		194.7
(1.6)
P 		238.4
(3)
P 		189
avr 40.7
(-3) 		50.6
(-2.7) 		42.9
(-2.9) 		74.4
(-1.9) 		221.7
(2.9) 		224.8
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9261
Sequence Type Exemplar sequence
Representative Public ID C27B7.5 NCBI
Target Description C27B7.5 /REP_DB=WormBase Gene ID /WP=CE03034 /TR=Q18244 /GB=CAA90980.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, CCHC class
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069145 NCBI Caenorhabditis elegans C27B7.5 (C27B7.5) mRNA, complete cds. 11/11 None
SNAP00000019243 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8901664:8905781:1 11/11 None
GENEFINDER00000019255 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8901643:8902942:1 11/11 None
C27B7.5 ENSEMBL cdna:known chromosome:CEL140:IV:8901627:8903143:1 gene:C27B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8901648-8902948(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, CCHC class
Ensembl C27B7.5
Entrez Gene 177707 Entrez gene
SwissProt Q18244 EMBL-EBI
WormBase CE03034 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90980 Hypothetical protein C27B7.5 [Caenorhabditis elegans] ref|NP_501546.1| C27B7.5 [Caenorhabditis elegans] 1.0E-157
blast CAA90980 Hypothetical protein C27B7.5 [Caenorhabditis elegans] ref|NP_501546.1| C27B7.5 [Caenorhabditis elegans] 1.0E-156
blast CAE74064 Hypothetical protein CBG21716 [Caenorhabditis briggsae] 2.0E-38
blast CAE74064 Hypothetical protein CBG21716 [Caenorhabditis briggsae] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.3E-4
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.3E-4
Sequence
Target Sequence 
>C. ELEGANS:190420_AT
gaaggctttgcatggaggtggactgtatcaaagcaagttggacaatcaaaaggcccgtga
gtcttattatggagggtacggctacagcatcaacagtctcaccccaagaagtgttggcag
cgtgagaagtggtttcacagcaccaatgatgtcgcccgaaattgacaaattctcagagca
gttggacaatgctttgaagctcagcaatgtcgagccggtagctccgtcgccatacgtgat
gactatcactggaaaagggccagctgaaaaattgatgaaagaagtgccaccagttgctcc
aatcaacactctacagagcagagaaggagccaaacaaatttctacggagactttgtcaat
cgagacacgcagaactgtgatgcgcgatggagaattccacttcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCTTTGCATGGAGGTGGACTG 29 333 675 Antisense
AAGGCCCGTGAGTCTTATTATGGAG 42 161 724 Antisense
TACGGCTACAGCATCAACAGTCTCA 14 649 751 Antisense
AACAGTCTCACCCCAAGAAGTGTTG 598 137 766 Antisense
GTTTCACAGCACCAATGATGTCGCC 323 449 806 Antisense
GTCGCCCGAAATTGACAAATTCTCA 591 475 825 Antisense
AGCAATGTCGAGCCGGTAGCTCCGT 58 77 877 Antisense
CTCCGTCGCCATACGTGATGACTAT 141 235 896 Antisense
TGAAAGAAGTGCCACCAGTTGCTCC 590 571 950 Antisense
CAGTTGCTCCAATCAACACTCTACA 248 207 965 Antisense
GCGCGATGGAGAATTCCACTTCGAG 293 287 1056 Antisense
Sequence Source Affymetrix Proprietary Database