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[190419_s_at] Fugu S31III125 protein

Description F47G9.1 /REP_DB=WormBase Gene ID /WP=CE05883 /TR=Q20546 /GB=CAA98480.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Fugu S31III125 protein
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 26      4grp_high_8_8 > 63      6grp_highest_nonorm > 57      6grp_total > 40      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2641
1 2 3 4 range
A 3909.7
(3)
P 		1807.7
(-2.8)
P 		3746.3
(2.6)
P 		1720.3
(-3)
P 		2189
B 2114.3
(-3)
P 		2682.5
(1.1)
P 		2947.7
(3)
P 		2827.8
(2.1)
P 		833
C 2637.8
(-0.5)
P 		3306.9
(1)
P 		4183.3
(3)
P 		1542.6
(-3)
P 		2641
avr 2887.3
(0.2) 		2599
(-0.9) 		3625.8
(3) 		2030.2
(-3) 		1596

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1852
1 2 3 4 5 6 range
A 1222.4
(-3)
P 		2317.5
(1.8)
P 		1672.6
(-1)
P 		2605.3
(3)
P 		2196.6
(1.2)
P 		1836.3
(-0.3)
P 		1383
B 2403.5
(-2.6)
P 		2803.6
(0.7)
P 		2496.8
(-1.8)
P 		3074
(3)
P 		2358.8
(-3)
P 		2454.2
(-2.2)
P 		715
C 3068.7
(3)
P 		2324.3
(-0.4)
P 		2853.1
(2)
P 		2025.4
(-1.8)
P 		2064.4
(-1.6)
P 		1756.5
(-3)
P 		1312
avr 2231.5
(-0.7) 		2481.8
(2.1) 		2340.8
(0.5) 		2568.2
(3) 		2206.6
(-0.9) 		2015.7
(-3) 		553
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1206
1 2 3 4 range
A 1423.5
(3)
P 		392.4
(-2.3)
P 		979.4
(0.7)
P 		251.8
(-3)
P 		1172
B 674.2
(2.3)
P 		662.5
(1.5)
P 		683.1
(3)
P 		602.6
(-3)
P 		81
C 873.2
(0.1)
P 		950.7
(0.5)
P 		1458
(3)
P 		260.1
(-3)
P 		1198
avr 990.3
(2.6) 		668.5
(-0.3) 		1040.2
(3) 		371.5
(-3) 		669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 225.3
(-3)
P 		824.2
(3)
P 		364.3
(-1.6)
P 		660.8
(1.4)
P 		662.8
(1.4)
P 		447.1
(-0.8)
P 		599
B 836.3
(0.9)
P 		933.2
(2.6)
P 		606.3
(-3)
P 		814.2
(0.5)
P 		958.3
(3)
P 		915.1
(2.3)
P 		352
C 1137.4
(3)
P 		709.2
(-0.5)
P 		726.2
(-0.4)
P 		407.3
(-3)
P 		668
(-0.9)
P 		588
(-1.5)
P 		730
avr 733
(0.9) 		822.2
(3) 		565.6
(-3) 		627.4
(-1.6) 		763
(1.6) 		650.1
(-1) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190419_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14265
Sequence Type Exemplar sequence
Representative Public ID F47G9.1 NCBI
Target Description F47G9.1 /REP_DB=WormBase Gene ID /WP=CE05883 /TR=Q20546 /GB=CAA98480.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Fugu S31III125 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073478 NCBI Caenorhabditis elegans F47G9.1 (F47G9.1) mRNA, complete cds. 11/11 None
SNAP00000034551 ENSEMBL cdna:SNAP chromosome:CEL140:V:11328392:11329534:-1 9/11 None
GENEFINDER00000034556 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11326870:11329534:-1 11/11 None
F47G9.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11326568:11329552:-1 gene:F47G9.1 11/11 None
F47G9.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11326870:11329554:-1 gene:F47G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11326869-11329534(-) 100.0 100.0
Public Domain and Genome References
Gene Title Fugu S31III125 protein
Ensembl F47G9.1
Entrez Gene 179567 Entrez gene
SwissProt Q20546 EMBL-EBI
WormBase CE05883 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588824_AT similar to transmembrane trafficking protein 21 cfa
CANINE_2:CFA.12999.1.S1_AT similar to transmembrane trafficking protein 21 cfa
CANINE_2:CFAAFFX.26060.1.S1_S_AT similar to transmembrane trafficking protein 21 cfa
DROSOPHILA_2:1631909_AT baiser dm
DROSGENOME1:150547_AT baiser dm
CHICKEN:GGAAFFX.20734.1.S1_S_AT transmembrane emp24-like trafficking protein 10 (yeast) gga
CHICKEN:GGA.2439.1.S1_AT Similar to Zgc:85681 protein gga
CHICKEN:GGA.2439.3.S1_AT Similar to Zgc:85681 protein gga
HG-U95AV2:36128_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133_PLUS_2:200929_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133A:200929_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-FOCUS:200929_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133A_2:200929_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HUGENEFL:U61734_S_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HUGENEFL:L40391_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HUGENEFL:L40397_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
U133_X3P:G5803200_3P_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
U133_X3P:HS.74137.2.S1_3P_A_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133A_2:212352_S_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133_PLUS_2:212352_S_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133A:212352_S_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U95AV2:35754_AT transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133_PLUS_2:238886_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133B:238886_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133_PLUS_2:239851_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U133B:239851_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U95C:52610_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HG-U95D:82790_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HU35KSUBC:RC_AA283038_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
HU35KSUBD:RC_AA521450_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
U133_X3P:HS.169399.0.A1_3P_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
U133_X3P:HS.41470.0.A1_3P_AT Transmembrane emp24-like trafficking protein 10 (yeast) hs
MOE430A:1424707_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430_2:1424707_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430A_2:1424707_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOE430A:1424708_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430_2:1424708_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430A_2:1424708_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOE430A:1454688_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430A_2:1454688_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430_2:1454688_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MG-U74AV2:93336_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MG-U74BV2:110384_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOE430A:1439444_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430A_2:1439444_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430_2:1439444_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOE430A:1439462_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430A_2:1439462_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MOUSE430_2:1439462_X_AT transmembrane emp24-like trafficking protein 10 (yeast) mm
MU19KSUBA:TC19589_AT Transmembrane emp24-like trafficking protein 10 (yeast) (Tmed10), mRNA mm
RG-U34A:X97443_S_AT transmembrane trafficking protein 21 rn
RG-U34A:AJ004912_S_AT transmembrane trafficking protein 21 rn
RG-U34B:RC_AA997494_S_AT transmembrane trafficking protein 21 rn
RAE230A:1398796_AT transmembrane trafficking protein 21 rn
RAT230_2:1398796_AT transmembrane trafficking protein 21 rn
RAE230A:1399015_AT Transmembrane trafficking protein 21 rn
RAT230_2:1399015_AT Transmembrane trafficking protein 21 rn
RG-U34C:RC_AI231038_AT Transmembrane trafficking protein 21 rn
RG-U34C:RC_AI236002_AT Transmembrane trafficking protein 21 rn
YEAST_2:1772250_AT Protein that forms a heterotrimeric complex with Erp1, Erp2p, and Emp24, member of the p24 family involved in endoplasmic reticulum to Golgi transport Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8320 protein carrier activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98480 Hypothetical protein F47G9.1 [Caenorhabditis elegans] ref|NP_505879.1| F47G9.1 [Caenorhabditis elegans] 1.0E-113
blast CAE75222 Hypothetical protein CBG23171 [Caenorhabditis briggsae] 1.0E-110
blast CAA98480 Hypothetical protein F47G9.1 [Caenorhabditis elegans] ref|NP_505879.1| F47G9.1 [Caenorhabditis elegans] 2.0E-90
blast CAE75222 Hypothetical protein CBG23171 [Caenorhabditis briggsae] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000348 EMBL-EBI emp24/gp25L/p24 1.5E-90
Pfam IPR000348 EMBL-EBI emp24/gp25L/p24 5.7E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505879.1 2 4-21,171-193
F47G9.1.1 2 4-21,171-193
F47G9.1.2 2 4-21,171-193
GENEFINDER00000034556 2 4-21,171-193
Sequence
Target Sequence 
>C. ELEGANS:190419_S_AT
aatctctagttatctttctgtcagctatcgttcttgcccattctctgaggttctacgtgc
caccaaaagagaaaaagtgtctgaaagaggaaattcacaagaatgtggtcgtaacaggag
aatatgagttcagtcaaggaattcaatacactggaagtattcacgtcaccgacaccagag
gccacactctctacaaacgtgaaaactttgctgatctaaaaggaaaattcgcgttcactg
ctgacgaatacgacatctttgagatttgcattgagaatcatccaccagctgggcatcctg
gagagaagcgcgaggtttctcttattttgaagcacggagtcgaagccaagaattatgatg
atattgccaaagccgagaagctgaagccactcgaggttgaacttagaagattggaggata
tggctgattcaatcaccaaagatttcgcattcatgcgccaaagagaggaagaaatgagaa
atacgaacgaatcgacaaacagccgagttctttacctgtccatcttttcaatgctgtgcc
ttcttggtcttgccatttggcaagttcttttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTCTAGTTATCTTTCTGTCAGC 606 169 17 Antisense
TCTTTCTGTCAGCTATCGTTCTTGC 468 615 29 Antisense
CTGAGGTTCTACGTGCCACCAAAAG 418 239 61 Antisense
GGCCACACTCTCTACAAACGTGAAA 542 543 196 Antisense
GAAAATTCGCGTTCACTGCTGACGA 514 353 239 Antisense
GCATTGAGAATCATCCACCAGCTGG 651 307 284 Antisense
TCCACCAGCTGGGCATCCTGGAGAG 474 589 297 Antisense
GAAGCGCGAGGTTTCTCTTATTTTG 550 343 321 Antisense
GAAGCTGAAGCCACTCGAGGTTGAA 502 343 393 Antisense
CAAACAGCCGAGTTCTTTACCTGTC 664 189 512 Antisense
TGCCATTTGGCAAGTTCTTTTCCTC 574 583 567 Antisense
Sequence Source Affymetrix Proprietary Database