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[190418_s_at]

Description R06C7.5 /REP_DB=WormBase Gene ID /WP=CE06248 /TR=Q21774 /GB=CAA95843.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=adenylosuccinate lyase
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 86      6grp_total > 65      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 902.2
(-3)
P 		1161.6
(1.9)
P 		1218.5
(3)
P 		970.4
(-1.7)
P 		316
B 800.3
(-3)
P 		867.7
(-1.6)
P 		1085
(3)
P 		973.4
(0.6)
P 		285
C 847.2
(-3)
P 		1084.9
(1.4)
P 		1174.2
(3)
P 		977.1
(-0.6)
P 		327
avr 849.9
(-3) 		1038.1
(0.7) 		1159.2
(3) 		973.6
(-0.6) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 856
1 2 3 4 5 6 range
A 788.4
(-2.5)
P 		748.1
(-3)
P 		1207.5
(3)
P 		915.9
(-0.8)
P 		865
(-1.5)
P 		975
(-0)
P 		459
B 977.7
(-2)
P 		846.7
(-3)
P 		1603.7
(3)
P 		1013.1
(-1.7)
P 		1032.7
(-1.5)
P 		1457.1
(1.8)
P 		757
C 852.6
(-2.4)
P 		788.5
(-3)
P 		1049.6
(-0.7)
P 		1071.4
(-0.5)
P 		897.6
(-2.1)
P 		1477.7
(3)
P 		689
avr 872.9
(-2.1) 		794.4
(-3) 		1286.9
(2.8) 		1000.1
(-0.6) 		931.8
(-1.4) 		1303.3
(3) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 328.5
(3)
P 		252.2
(0.5)
P 		318.5
(2.7)
P 		142.1
(-3)
P 		186
B 255.2
(3)
P 		214.3
(-2.1)
P 		251.4
(2.5)
P 		207.4
(-3)
P 		48
C 280.5
(-0.2)
P 		311.9
(0.6)
P 		409.2
(3)
P 		164.8
(-3)
P 		244
avr 288.1
(1.5) 		259.5
(0.4) 		326.4
(3) 		171.4
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 145.3
(-3)
P 		266
(3)
P 		263
(2.9)
P 		232.3
(1.3)
P 		261
(2.8)
P 		237.4
(1.6)
P 		121
B 340.2
(-1.4)
P 		281.8
(-2.7)
P 		389.4
(-0.4)
P 		268.3
(-3)
P 		419.6
(0.3)
P 		543.3
(3)
P 		275
C 316
(-0.8)
P 		240.6
(-2.5)
P 		267.1
(-1.9)
P 		215.5
(-3)
P 		290.5
(-1.4)
P 		494.7
(3)
P 		279
avr 267.2
(-2.1) 		262.8
(-2.2) 		306.5
(-0.8) 		238.7
(-3) 		323.7
(-0.3) 		425.1
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190418_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2217
Sequence Type Exemplar sequence
Representative Public ID R06C7.5 NCBI
Target Description R06C7.5 /REP_DB=WormBase Gene ID /WP=CE06248 /TR=Q21774 /GB=CAA95843.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=adenylosuccinate lyase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059648(11), NM_182050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059648 NCBI Caenorhabditis elegans R06C7.5a (R06C7.5) mRNA, complete cds. 11/11 None
NM_182050 NCBI Caenorhabditis elegans R06C7.5b (R06C7.5) mRNA, complete cds. 11/11 None
SNAP00000036115 ENSEMBL cdna:SNAP chromosome:CEL140:I:7255131:7256807:-1 11/11 None
GENEFINDER00000036124 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7255131:7256807:-1 11/11 None
R06C7.5a ENSEMBL cdna:known chromosome:CEL140:I:7255033:7256807:-1 gene:R06C7.5 11/11 None
R06C7.5b.2 ENSEMBL cdna:known chromosome:CEL140:I:7255058:7256820:-1 gene:R06C7.5 11/11 None
R06C7.5b.1 ENSEMBL cdna:known chromosome:CEL140:I:7255058:7256818:-1 gene:R06C7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7255061-7256738(-) 100.0 100.0
Public Domain and Genome References
Ensembl R06C7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95843 Hypothetical protein R06C7.5a [Caenorhabditis elegans] ref|NP_492049.1| R06C7.5a [Caenorhabditis elegans] 0.0
blast 1YIS Chain , Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase 0.0
blast CAE74232 Hypothetical protein CBG21917 [Caenorhabditis briggsae] 0.0
blast CAD56593 Hypothetical protein R06C7.5b [Caenorhabditis elegans] ref|NP_871850.1| R06C7.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000362 EMBL-EBI Fumarate lyase 2.4E-44
Sequence
Target Sequence 
>C. ELEGANS:190418_S_AT
ggagaacttcttgagccattcgagaaggatcagattggctcatctgcaatgccatataag
aaaaatccaatgaagagtgaaagatgctgtgctttatcgagaaagttgataaatgcccca
caagaagcacttacgattctcgccgatcaaggcctcgagcgaacactggatgattctgcc
ggaagaagaatgctcattccagatgtacttcttaccgctgaagctctgcttaccactctt
caaaacatcttcgaaggacttagtgtacaaacagacaatgtgaagaagatcgttgaagac
gaaattgcattccttggtttggaaaaggcaatgatgatgctgacggaagaaggtgtcgat
cggcaacaagctcatgctgtgatcagaaaaactgcgttggaagcaaaacaacttcaagcc
acacaaaaagttgatattcgacagacaatggccgatccatttttcgattcagttcgcgac
cgtgttgttgggcttgtcaataatccgataaacttcacggggcggtgtgtttcccagacg
gagagcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAACTTCTTGAGCCATTCGAGA 683 519 826 Antisense
GATTGGCTCATCTGCAATGCCATAT 318 435 858 Antisense
AATGCCCCACAAGAAGCACTTACGA 105 165 937 Antisense
CACTTACGATTCTCGCCGATCAAGG 231 197 953 Antisense
ATCAAGGCCTCGAGCGAACACTGGA 597 25 971 Antisense
GAACACTGGATGATTCTGCCGGAAG 317 351 986 Antisense
TTCCAGATGTACTTCTTACCGCTGA 681 697 1022 Antisense
GACGAAATTGCATTCCTTGGTTTGG 621 377 1123 Antisense
AGGTGTCGATCGGCAACAAGCTCAT 611 57 1176 Antisense
CGACCGTGTTGTTGGGCTTGTCAAT 172 251 1302 Antisense
GTGTGTTTCCCAGACGGAGAGCTTT 310 485 1350 Antisense
Sequence Source Affymetrix Proprietary Database