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[190417_at] Alcohol dehydrogenase

Description F27D9.7 /REP_DB=WormBase Gene ID /WP=CE28012 /TR=Q19844 /GB=AAK68351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Alcohol dehydrogenase
Cluster 6grp_total > 50      4grp_total > 42      6grp_cgc > 60      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 48.3
(-3)
A 		238.3
(3)
P 		162.8
(0.6)
P 		186.6
(1.4)
A 		190
B 47
(-3)
A 		256.4
(3)
P 		176.9
(0.7)
P 		155.7
(0.1)
A 		209
C 52.6
(-3)
A 		240.6
(3)
P 		176.3
(0.9)
P 		170.5
(0.8)
M 		188
avr 49.3
(-3) 		245.1
(3) 		172
(0.8) 		170.9
(0.7) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 164.8
(1.1)
A 		126.1
(-0.8)
P 		189.4
(2.2)
P 		205.4
(3)
M 		78.7
(-3)
A 		82.1
(-2.8)
A 		127
B 130.6
(0.5)
A 		141.8
(1.4)
P 		160.5
(3)
A 		148.6
(2)
P 		110
(-1.2)
A 		88.8
(-3)
A 		72
C 130
(1.2)
A 		155.4
(2.5)
P 		133
(1.4)
M 		165.9
(3)
P 		94
(-0.6)
A 		45
(-3)
A 		121
avr 141.8
(1.1) 		141.1
(1.1) 		161
(2.3) 		173.3
(3) 		94.2
(-1.7) 		72
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 17.6
(-3)
A 		51.7
(3)
P 		42.6
(1.4)
P 		27.3
(-1.3)
A 		34
B 15
(-3)
A 		63.3
(3)
P 		41
(0.2)
P 		33.2
(-0.7)
A 		48
C 17.4
(-3)
A 		69.2
(3)
P 		61.4
(2.1)
P 		28.8
(-1.7)
M 		52
avr 16.7
(-3) 		61.4
(3) 		48.3
(1.2) 		29.8
(-1.2) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 30.4
(-1.1)
A 		44.8
(1.6)
P 		41.2
(1)
P 		52.1
(3)
M 		23.7
(-2.3)
A 		20
(-3)
A 		32
B 45.4
(2.2)
A 		47.2
(3)
P 		39
(-0.5)
A 		39.3
(-0.4)
P 		44.7
(1.9)
A 		33.1
(-3)
A 		14
C 48.2
(3)
A 		47.4
(2.9)
P 		33.8
(0.4)
M 		33.4
(0.3)
P 		30.4
(-0.2)
A 		15.1
(-3)
A 		33
avr 41.3
(1.7) 		46.5
(3) 		38
(0.9) 		41.6
(1.8) 		32.9
(-0.4) 		22.7
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17190
Sequence Type Exemplar sequence
Representative Public ID F27D9.7 NCBI
Target Description F27D9.7 /REP_DB=WormBase Gene ID /WP=CE28012 /TR=Q19844 /GB=AAK68351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076894
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002734 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7665701:7670653:-1 None
SNAP00000002723 ENSEMBL cdna:SNAP chromosome:CEL140:X:7667393:7668563:-1 None
NM_076894 NCBI Caenorhabditis elegans F27D9.7 (F27D9.7) mRNA, complete cds. None
F27D9.7 ENSEMBL cdna:known chromosome:CEL140:X:7665810:7669369:-1 gene:F27D9.7 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076893 3/11 Cross Hyb Matching Probes A 
SNAP00000002721 3/11 Cross Hyb Matching Probes None
GENEFINDER00000002731 3/11 Cross Hyb Matching Probes None
SNAP00000002722 7/11 Cross Hyb Matching Probes None
F27D9.6 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7664135-7669368(-) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol dehydrogenase
Ensembl F27D9.7
Entrez Gene 185019 Entrez gene
SwissProt Q19844 EMBL-EBI
WormBase CE28012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68351 Hypothetical protein F27D9.7 [Caenorhabditis elegans] ref|NP_509295.1| F27D9.7 [Caenorhabditis elegans] 0.0
blast T16189 hypothetical protein F27D9.7 - Caenorhabditis elegans 0.0
blast CAE70256 Hypothetical protein CBG16757 [Caenorhabditis briggsae] 0.0
blast AAK68351 Hypothetical protein F27D9.7 [Caenorhabditis elegans] ref|NP_509295.1| F27D9.7 [Caenorhabditis elegans] 4.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509295.1 2 177-199,231-250
F27D9.7 2 177-199,231-250
GENEFINDER00000002734 2 286-308,340-359
SNAP00000002723 1 70-92
Sequence
Target Sequence 
>C. ELEGANS:190417_AT
atgcacgttgaaatcccatctgatcagtatcaatttattcagcaagacactcgctatggt
aattatgactacgaaagctggcctagcagtacttgttattcgttgattggatgccaagag
tgtatgacgtcaccagcaatcttgcccagtgtagactctactgctgaaacagtacaaact
tcagaagctaccgctgaaaactcagattctggaacaattcactctggagactcaaagcat
acggaaaatattattgatacaaatagaaaattatctgcggaactggtcactgaaaaagcg
attattccaacaactcccccaacagaagactatgagtatgaaataacaggggacccgcct
ggaagaagattagatttaggtgacgttaatattgtgatctgtaatgctgcaatcttatcc
ttcacatcattcatggagatttcggatgagctgctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACGTTGAAATCCCATCTGATC 652 43 1312 Antisense
TATTCAGCAAGACACTCGCTATGGT 170 661 1347 Antisense
TATGACTACGAAAGCTGGCCTAGCA 541 655 1375 Antisense
GGCCTAGCAGTACTTGTTATTCGTT 320 543 1391 Antisense
AATCTTGCCCAGTGTAGACTCTACT 568 169 1449 Antisense
ATTATCTGCGGAACTGGTCACTGAA 484 13 1581 Antisense
CAACTCCCCCAACAGAAGACTATGA 70 187 1622 Antisense
GGGGACCCGCCTGGAAGAAGATTAG 338 487 1660 Antisense
GTAATGCTGCAATCTTATCCTTCAC 154 463 1712 Antisense
ATCTTATCCTTCACATCATTCATGG 411 29 1723 Antisense
GGAGATTTCGGATGAGCTGCTCAGA 182 519 1746 Antisense
Sequence Source Affymetrix Proprietary Database