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[190416_at] exopolygalacturonase

Description T03G11.5 /REP_DB=WormBase Gene ID /WP=CE04873 /TR=Q22121 /GB=AAA82447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=exopolygalacturonase
Cluster 6grp_total > 35      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 228.7
(0.6)
P 		147.9
(-1.4)
A 		80.4
(-3)
A 		329.3
(3)
P 		249
B 393
(3)
P 		175.7
(-1.3)
A 		92.5
(-3)
A 		292.5
(1)
P 		301
C 357.8
(3)
P 		164.6
(-1.4)
P 		94.9
(-3)
A 		332.2
(2.4)
P 		263
avr 326.5
(3) 		162.7
(-1.1) 		89.3
(-3) 		318
(2.8) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 243.5
(3)
A 		215.5
(2)
A 		147.5
(-0.5)
P 		76.9
(-3)
A 		100.6
(-2.1)
A 		120.8
(-1.4)
A 		167
B 176.2
(1.5)
P 		207.9
(3)
A 		178.8
(1.6)
A 		118.3
(-1.2)
A 		81.3
(-3)
A 		133.9
(-0.5)
A 		127
C 164.1
(0.3)
P 		233.7
(3)
A 		138.2
(-0.7)
A 		119.3
(-1.4)
A 		77.5
(-3)
A 		125.8
(-1.1)
A 		156
avr 194.6
(1.9) 		219
(3) 		154.8
(0.1) 		104.8
(-2.2) 		86.5
(-3) 		126.8
(-1.2) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 83.3
(3)
P 		32.1
(-1.9)
A 		21
(-3)
A 		48.2
(-0.4)
P 		62
B 125.3
(3)
P 		43.4
(-1.7)
A 		21.4
(-3)
A 		62.3
(-0.6)
P 		104
C 118.5
(3)
P 		47.3
(-2)
P 		33.1
(-3)
A 		56
(-1.4)
P 		85
avr 109
(3) 		40.9
(-1.9) 		25.2
(-3) 		55.5
(-0.8) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 44.9
(-0.3)
A 		76.7
(3)
A 		32.1
(-1.7)
P 		19.5
(-3)
A 		30.4
(-1.9)
A 		29.4
(-2)
A 		57
B 61.3
(1.7)
P 		69.2
(3)
A 		43.4
(-1.1)
A 		31.3
(-3)
A 		33
(-2.7)
A 		49.9
(-0.1)
A 		38
C 60.8
(1.7)
P 		71.3
(3)
A 		35.2
(-1.6)
A 		24
(-3)
A 		25.1
(-2.9)
A 		42.1
(-0.7)
A 		47
avr 55.7
(0.9) 		72.4
(3) 		36.9
(-1.5) 		24.9
(-3) 		29.5
(-2.4) 		40.5
(-1) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16916
Sequence Type Exemplar sequence
Representative Public ID T03G11.5 NCBI
Target Description T03G11.5 /REP_DB=WormBase Gene ID /WP=CE04873 /TR=Q22121 /GB=AAA82447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=exopolygalacturonase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076477 NCBI Caenorhabditis elegans T03G11.5 (exopolygalacturonase) mRNA, complete cds. 11/11 None
SNAP00000028925 ENSEMBL cdna:SNAP chromosome:CEL140:X:5168706:5169137:-1 11/11 None
T03G11.5 ENSEMBL cdna:known chromosome:CEL140:X:5168706:5169137:-1 gene:T03G11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5168706-5169138(-) 100.0 100.0
Public Domain and Genome References
Gene Title exopolygalacturonase
Ensembl T03G11.5
Entrez Gene 188033 Entrez gene
SwissProt Q22121 EMBL-EBI
WormBase CE04873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508878 T03G11.5 [Caenorhabditis elegans] gb|AAA82447.1| Hypothetical protein T03G11.5 [Caenorhabditis elegans] 2.0E-56
blast CAE68704 Hypothetical protein CBG14625 [Caenorhabditis briggsae] 8.0E-32
Sequence
Target Sequence 
>C. ELEGANS:190416_AT
gtaccaccgaagccatcattataacaagcagcgtggtgagattgatcatcgaccaataac
tacgacaacaatgagcacattgagcacattcacctctactgcaattacaatttctcctgc
tcttgctgacgtgttttcaagacaaattgaaatgtcgaaaatcgaaacatcgtcggatcc
gtgtgaatgtgaagtgaagcattgtcctcaaaaatgtttcacggcgcttgtttccggcac
cacaacagcgctggccacaacacgaccaacaacaacggcaacgtcttccacgtttaataa
tattacactgccggaaaactcgaaagaatctcaacttctcgtcaactcatatccacacgt
cttccaatcctgctcattaatcatctttttcgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCACCGAAGCCATCATTATAAC 677 457 15 Antisense
GAGCACATTGAGCACATTCACCTCT 70 391 87 Antisense
ACATTCACCTCTACTGCAATTACAA 285 105 100 Antisense
CAATTACAATTTCTCCTGCTCTTGC 468 179 116 Antisense
AATCGAAACATCGTCGGATCCGTGT 195 167 174 Antisense
AAATGTTTCACGGCGCTTGTTTCCG 216 121 226 Antisense
CAACAACGGCAACGTCTTCCACGTT 343 189 284 Antisense
AAGAATCTCAACTTCTCGTCAACTC 36 153 338 Antisense
TCTCGTCAACTCATATCCACACGTC 409 611 351 Antisense
TCTTCCAATCCTGCTCATTAATCAT 649 617 374 Antisense
GCTCATTAATCATCTTTTTCGTCAC 324 301 386 Antisense
Sequence Source Affymetrix Proprietary Database