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[190411_at] Rhodanese-like domain

Description H12D21.4 /REP_DB=WormBase Gene ID /WP=CE19917 /TR=Q9XTX2 /GB=CAB07425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Rhodanese-like domain
Cluster 6grp_total > 50      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 30.1
(-1.3)
A 		33.1
(-1)
A 		8.4
(-3)
A 		84.1
(3)
P 		76
B 15.4
(-3)
A 		39.3
(2.1)
A 		43.6
(3)
A 		29.7
(0)
P 		28
C 12.7
(-2.2)
A 		17.2
(-1.8)
A 		4.1
(-3)
A 		70.3
(3)
P 		66
avr 19.4
(-2.9) 		29.9
(-1.4) 		18.7
(-3) 		61.4
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 53.2
(1.5)
A 		23
(-1.2)
A 		22.9
(-1.2)
A 		69.9
(3)
A 		13.7
(-2)
A 		2.4
(-3)
A 		68
B 39.4
(2)
A 		32.4
(1)
A 		45.8
(3)
A 		37.2
(1.7)
A 		6.1
(-3)
A 		44
(2.7)
A 		40
C 29.8
(-0.3)
A 		39.8
(0.7)
A 		62.2
(3)
A 		3
(-3)
A 		28.4
(-0.4)
A 		40.3
(0.8)
A 		59
avr 40.8
(2.4) 		31.7
(0.4) 		43.6
(3) 		36.7
(1.5) 		16.1
(-3) 		28.9
(-0.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11
(2.2)
A 		7.2
(-0)
A 		2.2
(-3)
A 		12.3
(3)
P 		10
B 4.9
(-3)
A 		9.7
(2.5)
A 		10.1
(3)
A 		6.3
(-1.4)
P 		5
C 4.2
(-1.4)
A 		4.9
(-1)
A 		1.4
(-3)
A 		11.9
(3)
P 		11
avr 6.7
(-0.8) 		7.3
(-0.1) 		4.6
(-3) 		10.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.8
(0.2)
A 		8.2
(-0.3)
A 		5
(-1.5)
A 		17.7
(3)
A 		4.1
(-1.8)
A 		0.6
(-3)
A 		17
B 13.7
(1.8)
A 		10.8
(0.6)
A 		11.1
(0.7)
A 		9.9
(0.2)
A 		2.5
(-3)
A 		16.4
(3)
A 		14
C 11.1
(1.1)
A 		12.1
(1.5)
A 		15.8
(3)
A 		0.6
(-3)
A 		9.2
(0.4)
A 		13.5
(2.1)
A 		15
avr 11.5
(3) 		10.4
(1.9) 		10.6
(2.1) 		9.4
(1) 		5.3
(-3) 		10.2
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14128
Sequence Type Exemplar sequence
Representative Public ID H12D21.4 NCBI
Target Description H12D21.4 /REP_DB=WormBase Gene ID /WP=CE19917 /TR=Q9XTX2 /GB=CAB07425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Rhodanese-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074270 NCBI Caenorhabditis elegans H12D21.4 (H12D21.4) mRNA, complete cds. 11/11 None
SNAP00000026962 ENSEMBL cdna:SNAP chromosome:CEL140:V:14894039:14895925:-1 11/11 None
GENEFINDER00000026979 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14894039:14896024:-1 11/11 None
H12D21.4 ENSEMBL cdna:known chromosome:CEL140:V:14894039:14896024:-1 gene:H12D21.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14894038-14896024(-) 100.0 100.0
Public Domain and Genome References
Gene Title Rhodanese-like domain
Ensembl H12D21.4
Entrez Gene 186728 Entrez gene
SwissProt Q9XTX2 EMBL-EBI
WormBase CE19917 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8272 sulfate transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4792 thiosulfate sulfurtransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07425 Hypothetical protein H12D21.4 [Caenorhabditis elegans] ref|NP_506671.1| H12D21.4 [Caenorhabditis elegans] 0.0
blast CAB07425 Hypothetical protein H12D21.4 [Caenorhabditis elegans] ref|NP_506671.1| H12D21.4 [Caenorhabditis elegans] 1.0E-167
blast CAB07429 Hypothetical protein H12D21.7 [Caenorhabditis elegans] ref|NP_506674.2| H12D21.7 [Caenorhabditis elegans] 1.0E-118
blast CAB07429 Hypothetical protein H12D21.7 [Caenorhabditis elegans] ref|NP_506674.2| H12D21.7 [Caenorhabditis elegans] 1.0E-113
blast CAE60835 Hypothetical protein CBG04544 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001763 EMBL-EBI Rhodanese-like 2.1E-11
Pfam IPR001763 EMBL-EBI Rhodanese-like 2.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506671.1 1 2-24
H12D21.4 1 2-24
GENEFINDER00000026979 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:190411_AT
ttacagtaacggtccagcttctggaatgaagtttgcatcaagagcttattggactttcaa
gatgtatggttttacaactgtaagcctcctgaacggagggatggatgtttggaaagctgc
tggagggccaactgacaacgccgttgtcaccccaaaacttggaaacgtcaatgtcaagtc
gttggacaacacaattttggcaaagtttgaagaaattccatttaataatttcgcggagac
taacactgtatacttggatactaggattcgggcacagtttgatggagaagatcctcttgc
caccaattttccaggaaccaaagccaaaggatctcatgttactggagcaataaatttccc
aatggcgaaagtaattggaccagatggatttattagtcagcaagacgttgacgaacagat
ttcaagtcttggccttacttctgccagtcaggttttcgtcggatgtaacactggtatgca
agcatctgtaatctttgttgctctagagagaagtggttttaaagcaaaactttataatgg
aagtatgttcgaattgtcctatcgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACAGTAACGGTCCAGCTTCTGGA 513 679 390 Antisense
TACAACTGTAAGCCTCCTGAACGGA 153 627 462 Antisense
AATTTCGCGGAGACTAACACTGTAT 347 175 616 Antisense
CTAGGATTCGGGCACAGTTTGATGG 369 225 650 Antisense
TCTTGCCACCAATTTTCCAGGAACC 183 619 684 Antisense
AAAGCCAAAGGATCTCATGTTACTG 504 123 709 Antisense
TCAAGTCTTGGCCTTACTTCTGCCA 57 633 811 Antisense
TACTTCTGCCAGTCAGGTTTTCGTC 266 645 825 Antisense
GGTTTTCGTCGGATGTAACACTGGT 591 445 840 Antisense
GCATCTGTAATCTTTGTTGCTCTAG 596 309 871 Antisense
GTATGTTCGAATTGTCCTATCGCGC 710 455 932 Antisense
Sequence Source Affymetrix Proprietary Database