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[190410_s_at]

Description F56B6.4 /REP_DB=WormBase Gene ID /WP=CE04664 /GEN=uvt-5 /TR=Q22997 /GB=AAB04562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycogenin
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 25      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 41      6grp_total > 25      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1445
1 2 3 4 range
A 1406.4
(3)
P 		500.4
(-1.3)
P 		571
(-1)
P 		142.5
(-3)
P 		1264
B 1467.5
(3)
P 		502.1
(-1.7)
P 		622.3
(-1.1)
P 		236.3
(-3)
P 		1231
C 1587.6
(3)
P 		553.2
(-1.5)
P 		568.7
(-1.5)
P 		217.5
(-3)
P 		1370
avr 1487.2
(3) 		518.6
(-1.5) 		587.3
(-1.2) 		198.8
(-3) 		1288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 950.9
(3)
P 		794.3
(0.5)
P 		619.8
(-2.4)
P 		580.7
(-3)
P 		746.4
(-0.3)
P 		698.2
(-1.1)
P 		370
B 748.6
(0.2)
P 		830
(2.5)
P 		846.4
(3)
P 		797
(1.6)
P 		682.3
(-1.8)
P 		640.4
(-3)
P 		206
C 809.1
(2.4)
P 		835.8
(3)
P 		705.2
(0.3)
P 		743.8
(1.1)
P 		545.7
(-3)
P 		731.1
(0.8)
P 		290
avr 836.2
(3) 		820
(2.5) 		723.8
(-0.8) 		707.2
(-1.3) 		658.1
(-3) 		689.9
(-1.9) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 512.1
(3)
P 		108.6
(-1.9)
P 		149.3
(-1.4)
P 		20.9
(-3)
P 		491
B 468
(3)
P 		124
(-1.9)
P 		144.2
(-1.7)
P 		50.3
(-3)
P 		418
C 525.5
(3)
P 		159.1
(-1.5)
P 		198.2
(-1)
P 		36.7
(-3)
P 		489
avr 501.9
(3) 		130.6
(-1.8) 		163.9
(-1.4) 		36
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 175.3
(-1.4)
P 		282.5
(3)
P 		135
(-3)
P 		147.3
(-2.5)
P 		225.2
(0.7)
P 		170
(-1.6)
P 		148
B 260.5
(1.6)
P 		276.3
(2.9)
P 		205.5
(-3)
P 		211.1
(-2.5)
P 		277.2
(3)
P 		238.8
(-0.2)
P 		72
C 299.9
(3)
P 		255
(1.2)
P 		179.5
(-1.8)
P 		149.6
(-3)
P 		176.6
(-1.9)
P 		244.7
(0.8)
P 		150
avr 245.2
(1.5) 		271.3
(3) 		173.3
(-2.8) 		169.3
(-3) 		226.3
(0.4) 		217.8
(-0.1) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18475
Sequence Type Exemplar sequence
Representative Public ID F56B6.4 NCBI
Target Description F56B6.4 /REP_DB=WormBase Gene ID /WP=CE04664 /GEN=uvt-5 /TR=Q22997 /GB=AAB04562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycogenin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076207 NCBI Caenorhabditis elegans F56B6.4a (glycogenin) mRNA, complete cds. 11/11 None
SNAP00000023803 ENSEMBL cdna:SNAP chromosome:CEL140:X:3537629:3540609:1 9/11 None
F56B6.4a ENSEMBL cdna:known chromosome:CEL140:X:3537628:3540922:1 gene:F56B6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076208 4/11 Cross Hyb Matching Probes None
NM_171944 6/11 Cross Hyb Matching Probes None
GENEFINDER00000023815 7/11 Cross Hyb Matching Probes None
F56B6.4c 6/11 Cross Hyb Matching Probes None
F56B6.4b 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180644 3 1 NM_076207 190410_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3537629-3540610(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56B6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04562 Unidentified vitellogenin-linked transcript protein 5, isoform a [Caenorhabditis elegans] ref|NP_508608.1| F56B6.4a [Caenorhabditis elegans] 0.0
blast AAM69110 Unidentified vitellogenin-linked transcript protein 5, isoform c [Caenorhabditis elegans] ref|NP_741749.1| F56B6.4c [Caenorhabditis elegans] 1.0E-137
blast AAL11464 Unidentified vitellogenin-linked transcript protein 5, isoform b [Caenorhabditis elegans] ref|NP_508609.1| F56B6.4b [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 2.5E-69
Sequence
Target Sequence 
>C. ELEGANS:190410_S_AT
cactggcgaacacttccaacaatggcagaaaatctatcacgcccatgtgaatcatacgtc
aagaacaaatgagcatgctgcagtgtttccatctcatcatcatactcccgaacacaggag
tcactctgctgatcatccaaaaatagaacggaaagattcgatcgtcagggaaattgggaa
ttttgtaatgcatgttgttcagtctgttaatattttgccatcatacgatacggacgctaa
taccagtgattcacatagaaataacgaacctcacaaacatgaccaacaacgcgaagagca
tcatgagcttccacataataagtttcaaacgccgcatgaagaatctcaagatatagtggg
tagtacagattgctttggaagccagatgccaaaatacaatgctgatagtgaaactgatcg
agaagtagagcagattactaataatactccctgcccagcgtttgttccttttgagaggcg
tgaggaataccaggccgcatcaccatcgactgaggagcgccgcgccgcctgggaagccgg
acagcctgattacttgggacgtgacgcattcgttcacattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGGCGAACACTTCCAACAATGG 551 197 690 Antisense
AAATGAGCATGCTGCAGTGTTTCCA 492 119 756 Antisense
CATCATCATACTCCCGAACACAGGA 350 213 784 Antisense
ACAGGAGTCACTCTGCTGATCATCC 446 107 803 Antisense
GTAATGCATGTTGTTCAGTCTGTTA 256 463 874 Antisense
ACGGACGCTAATACCAGTGATTCAC 494 95 919 Antisense
CCCAGCGTTTGTTCCTTTTGAGAGG 373 259 1143 Antisense
GGCGTGAGGAATACCAGGCCGCATC 410 539 1166 Antisense
CGCATCACCATCGACTGAGGAGCGC 327 255 1185 Antisense
GAAGCCGGACAGCCTGATTACTTGG 97 345 1222 Antisense
GGACGTGACGCATTCGTTCACATTC 581 523 1246 Antisense
Sequence Source Affymetrix Proprietary Database