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[190405_s_at]

Description W07A8.2 /REP_DB=WormBase Gene ID /WP=CE18340 /TR=O62398 /GB=CAA16371.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat (4 domains)
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 04      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 165.4
(0.6)
A 		113.3
(-3)
P 		121
(-2.5)
A 		199.1
(3)
P 		86
B 102
(-1.6)
A 		91.7
(-2.1)
A 		72.7
(-3)
A 		195.7
(3)
P 		123
C 133.6
(-1.8)
M 		115.3
(-3)
A 		115.3
(-3)
A 		210.5
(3)
P 		95
avr 133.7
(-1.1) 		106.8
(-2.8) 		103
(-3) 		201.8
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 650
1 2 3 4 5 6 range
A 139.7
(-2.9)
P 		168
(-2.7)
P 		134.2
(-3)
A 		220.4
(-2.2)
P 		322.5
(-1.2)
P 		751.8
(3)
P 		618
B 135.1
(-2.6)
P 		101.6
(-3)
P 		146.1
(-2.4)
A 		243.3
(-1.2)
P 		353.8
(0.2)
P 		568
(3)
P 		466
C 201.5
(-1.8)
P 		126.9
(-3)
M 		215.9
(-1.5)
P 		205
(-1.7)
P 		349.9
(0.7)
P 		487.6
(3)
P 		361
avr 158.8
(-2.7) 		132.2
(-3) 		165.4
(-2.6) 		222.9
(-1.8) 		342.1
(-0.3) 		602.5
(3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 60.2
(3)
A 		24.6
(-3)
P 		31.6
(-1.8)
A 		29.1
(-2.2)
P 		36
B 32.5
(0.8)
A 		22.7
(-1.6)
A 		16.8
(-3)
A 		41.7
(3)
P 		25
C 44.2
(3)
M 		33.2
(-3)
A 		40.2
(0.8)
A 		35.5
(-1.7)
P 		11
avr 45.6
(3) 		26.8
(-3) 		29.5
(-2.1) 		35.4
(-0.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 25.8
(-3)
P 		59.8
(-1.7)
P 		29.2
(-2.9)
A 		55.9
(-1.9)
P 		97.3
(-0.3)
P 		183
(3)
P 		157
B 47
(-2.6)
P 		33.8
(-3)
P 		35.5
(-2.9)
A 		64.5
(-2)
P 		143.8
(0.7)
P 		211.8
(3)
P 		178
C 74.7
(-1.3)
P 		38.7
(-3)
M 		54.9
(-2.2)
P 		41.2
(-2.9)
P 		113.2
(0.6)
P 		163.2
(3)
P 		125
avr 49.2
(-2.6) 		44.1
(-2.8) 		39.9
(-3) 		53.9
(-2.4) 		118.1
(0.2) 		186
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190405_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13188
Sequence Type Exemplar sequence
Representative Public ID W07A8.2 NCBI
Target Description W07A8.2 /REP_DB=WormBase Gene ID /WP=CE18340 /TR=O62398 /GB=CAA16371.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075599(11), NM_182370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075599 NCBI Caenorhabditis elegans W07A8.2a (W07A8.2) mRNA, complete cds. 11/11 None
NM_182370 NCBI Caenorhabditis elegans W07A8.2b (W07A8.2) mRNA, complete cds. 11/11 None
SNAP00000035158 ENSEMBL cdna:SNAP chromosome:CEL140:V:20716103:20718550:-1 11/11 None
GENEFINDER00000035160 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20716103:20719283:-1 11/11 None
W07A8.2a ENSEMBL cdna:known chromosome:CEL140:V:20715923:20727320:-1 gene:W07A8.2 11/11 None
W07A8.2b ENSEMBL cdna:known chromosome:CEL140:V:20716103:20726790:-1 gene:W07A8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20716102-20726790(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07A8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04932 Hypothetical protein W07A8.2a [Caenorhabditis elegans] emb|CAA16371.1| Hypothetical protein W07A8.2a [Caenorhabditis elegans] ref|NP_508000.1| W07A8.2a [Caenorhabditis elegans] 0.0
blast CAD54162 Hypothetical protein W07A8.2b [Caenorhabditis elegans] emb|CAD54166.1| Hypothetical protein W07A8.2b [Caenorhabditis elegans] ref|NP_872170.1| W07A8.2b [Caenorhabditis elegans] 0.0
blast CAE61648 Hypothetical protein CBG05582 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 1.3E-48
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.6
Pfam IPR002110 EMBL-EBI Ankyrin 21.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.022
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-11
Pfam IPR002110 EMBL-EBI Ankyrin 0.48
Pfam IPR002641 EMBL-EBI Patatin 1.3E-48
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.6
Pfam IPR002110 EMBL-EBI Ankyrin 21.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.022
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-11
Pfam IPR002110 EMBL-EBI Ankyrin 0.48
Pfam IPR002641 EMBL-EBI Patatin 1.1E-18
Pfam IPR002641 EMBL-EBI Patatin 1.7E-17
Sequence
Target Sequence 
>C. ELEGANS:190405_S_AT
aaagctactcgacgaagcagcgctgctccaacatacttctcagcttccgagggaaagttt
atcgatggtggaatgatctcgaacaatccggtgctcgatttgatgtccgacattggattc
tacaatactacgtgtcagaagatgaggattcccgaaaaaatggtcgacatgggctgtgtg
ctgtctgttggcactggaatcaccccgatctgcccggttgatccgtcggttttcgagatg
aatgatctattcggaatgctacgtggtatgaagaatctctcgttggtcgtcattgatcag
gcaactgcgaccgaaggagccccgatcactaggagcagaacttggtgtcattcattgggt
gtaccatactatcgacttaatgcacctattttcaaggacgtcattctcgacacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTACTCGACGAAGCAGCGCTG 342 123 2530 Antisense
GCTGCTCCAACATACTTCTCAGCTT 526 297 2551 Antisense
AATGATCTCGAACAATCCGGTGCTC 334 163 2601 Antisense
TCCGGTGCTCGATTTGATGTCCGAC 92 595 2616 Antisense
AATGGTCGACATGGGCTGTGTGCTG 174 163 2688 Antisense
GCTGTCTGTTGGCACTGGAATCACC 142 293 2709 Antisense
GGTTGATCCGTCGGTTTTCGAGATG 283 507 2745 Antisense
CTCTCGTTGGTCGTCATTGATCAGG 220 231 2806 Antisense
CAGGCAACTGCGACCGAAGGAGCCC 550 207 2827 Antisense
AGCCCCGATCACTAGGAGCAGAACT 332 83 2847 Antisense
TTCAAGGACGTCATTCTCGACACCA 476 671 2920 Antisense
Sequence Source Affymetrix Proprietary Database