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[190403_s_at] Zinc finger, C2H2 type

Description K04C1.3 /REP_DB=WormBase Gene ID /WP=CE06087 /TR=Q21202 /GB=CAA94210.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 63      4grp_high_8_8 > 20      6grp_highest_nonorm > 90      6grp_total > 60      4grp_total > 27      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 147.2
(-1.4)
P 		137.2
(-3)
P 		152.5
(-0.6)
P 		175.3
(3)
P 		38
B 142.3
(-2.4)
P 		222.3
(3)
P 		133.4
(-3)
A 		200.7
(1.5)
P 		89
C 141.9
(-0.1)
P 		132.8
(-0.6)
P 		91.8
(-3)
P 		194.7
(3)
P 		103
avr 143.8
(-1.3) 		164.1
(0.6) 		125.9
(-3) 		190.2
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 176.2
(1.2)
P 		136.8
(-1.9)
P 		176.9
(1.2)
P 		199.1
(3)
P 		125.4
(-2.8)
P 		123.5
(-3)
P 		76
B 121.8
(-3)
P 		148.6
(-0.9)
P 		198.3
(3)
P 		196.9
(2.9)
P 		148.4
(-0.9)
P 		146.6
(-1.1)
P 		77
C 122.3
(-1.5)
P 		164.3
(2)
P 		176.4
(3)
P 		175.4
(2.9)
P 		104.5
(-3)
P 		171.8
(2.6)
P 		72
avr 140.1
(-1.7) 		149.9
(-0.8) 		183.9
(2.4) 		190.5
(3) 		126.1
(-3) 		147.3
(-1) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 53.6
(3)
P 		29.8
(-2.1)
P 		39.9
(0.1)
P 		25.7
(-3)
P 		28
B 45.4
(0.6)
P 		54.9
(3)
P 		30.9
(-3)
A 		42.8
(-0)
P 		24
C 47
(3)
P 		38.2
(-0.5)
P 		32
(-3)
P 		32.8
(-2.7)
P 		15
avr 48.7
(3) 		41
(-0.1) 		34.3
(-2.8) 		33.8
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 32.5
(-2.3)
P 		48.7
(2.5)
P 		38.5
(-0.5)
P 		50.5
(3)
P 		37.9
(-0.7)
P 		30.1
(-3)
P 		20
B 42.4
(-3)
P 		49.5
(-0.6)
P 		48.2
(-1.1)
P 		52.2
(0.3)
P 		60.3
(3)
P 		54.7
(1.1)
P 		18
C 45.3
(-0.1)
P 		50.1
(1.1)
P 		44.9
(-0.2)
P 		35.3
(-2.6)
P 		33.8
(-3)
P 		57.5
(3)
P 		24
avr 40.1
(-3) 		49.4
(3) 		43.9
(-0.5) 		46
(0.8) 		44
(-0.5) 		47.4
(1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190403_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17873
Sequence Type Exemplar sequence
Representative Public ID K04C1.3 NCBI
Target Description K04C1.3 /REP_DB=WormBase Gene ID /WP=CE06087 /TR=Q21202 /GB=CAA94210.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077973 NCBI Caenorhabditis elegans K04C1.3 (K04C1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000041368 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14241781:14243313:-1 11/11 None
K04C1.3.2 ENSEMBL cdna:known chromosome:CEL140:X:14241554:14243315:-1 gene:K04C1.3 11/11 None
K04C1.3.1 ENSEMBL cdna:known chromosome:CEL140:X:14241554:14243317:-1 gene:K04C1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041360 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14241780-14243313(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl K04C1.3
Entrez Gene 181533 Entrez gene
SwissProt Q21202 EMBL-EBI
WormBase CE06087 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94210 Hypothetical protein K04C1.3 [Caenorhabditis elegans] ref|NP_510374.1| K04C1.3 [Caenorhabditis elegans] 1.0E-163
blast CAB02664 Hypothetical protein F21G4.5 [Caenorhabditis elegans] ref|NP_509662.1| F21G4.5 [Caenorhabditis elegans] 9.0E-32
blast CAE65289 Hypothetical protein CBG10202 [Caenorhabditis briggsae] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:190403_S_AT
cacactgaactgctcatttggctctccgttggcatcttttttggcaattgagtctttgaa
gatttatatggacaaaccaccaaactccaaatatcaacgtagatatgcactaattgaatt
gaagagtgtggaaagaagtttcaaactatttttcgacttcacatggattgagaagaacat
tttcagattccgtgaaaaccgaagacgcaagcagaataaacgaaacaacgttgtgacagt
gaagcccatgttgctacaaaagaaaacggttcagccgaatgtgaatcgtccatcaatcag
ttttcatcagtgtctggcgcaagctttgatttttccaaccgacttaactgaagacattct
tctgaaggaaaccacacaaaccgcttcaaatgaacagaaaacaataacatcacaaccggc
agcttcttctaacgtgttcaacagaaacaattccgacgaaaatttgcttttcgagctcat
gcaggacacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACTGAACTGCTCATTTGGCTCT 34 195 417 Antisense
ACAAACCACCAAACTCCAAATATCA 481 111 488 Antisense
CAAACTATTTTTCGACTTCACATGG 373 191 558 Antisense
GTGACAGTGAAGCCCATGTTGCTAC 216 483 649 Antisense
GGTTCAGCCGAATGTGAATCGTCCA 386 507 684 Antisense
GTTTTCATCAGTGTCTGGCGCAAGC 73 449 716 Antisense
GGCGCAAGCTTTGATTTTTCCAACC 299 541 732 Antisense
AACCACACAAACCGCTTCAAATGAA 543 147 786 Antisense
AACAATAACATCACAACCGGCAGCT 427 133 816 Antisense
CAGCTTCTTCTAACGTGTTCAACAG 37 205 836 Antisense
GCTTTTCGAGCTCATGCAGGACACC 193 305 882 Antisense
Sequence Source Affymetrix Proprietary Database