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[190402_at]

Description R08E3.4 /REP_DB=WormBase Gene ID /WP=CE04825 /TR=Q21847 /GB=AAC48197.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger
Cluster 6grp_total > 11      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 134
(-0.1)
A 		164.8
(3)
A 		143.7
(0.9)
A 		105.8
(-3)
A 		59
B 146
(-0.4)
M 		202.4
(1.9)
A 		230.7
(3)
P 		80.6
(-3)
A 		150
C 113.4
(-3)
A 		207.1
(2.9)
A 		208.8
(3)
P 		127.3
(-2.1)
A 		95
avr 131.1
(-1.2) 		191.4
(2.8) 		194.4
(3) 		104.6
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 76
(-1)
A 		201.1
(3)
P 		78.1
(-1)
A 		14.9
(-3)
A 		24.6
(-2.7)
A 		61.9
(-1.5)
A 		186
B 115.7
(3)
A 		113.7
(2.9)
A 		110.3
(2.7)
A 		19.5
(-3)
A 		60.4
(-0.4)
A 		37.9
(-1.9)
A 		96
C 82.3
(-0.1)
A 		148
(3)
A 		67.4
(-0.8)
A 		28.1
(-2.6)
A 		77.2
(-0.3)
A 		19.9
(-3)
A 		128
avr 91.3
(0.2) 		154.3
(3) 		85.3
(-0.1) 		20.8
(-3) 		54.1
(-1.5) 		39.9
(-2.1) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 48.8
(3)
A 		35.8
(0.7)
A 		37.6
(1)
A 		15.5
(-3)
A 		33
B 46.6
(1.9)
M 		50
(2.4)
A 		53.4
(3)
P 		17.2
(-3)
A 		36
C 37.5
(-1.1)
A 		59.5
(1.4)
A 		72.8
(3)
P 		21.5
(-3)
A 		51
avr 44.3
(1.3) 		48.4
(2) 		54.6
(3) 		18.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 14
(-2.1)
A 		71.5
(3)
P 		17
(-1.8)
A 		3.8
(-3)
A 		7.4
(-2.7)
A 		15.1
(-2)
A 		68
B 40.3
(3)
A 		37.9
(2.6)
A 		26.8
(0.7)
A 		5.2
(-3)
A 		24.6
(0.3)
A 		14.1
(-1.5)
A 		35
C 30.5
(0.8)
A 		45.2
(3)
A 		17.2
(-1.3)
A 		5.7
(-3)
A 		25
(-0.1)
A 		6.7
(-2.8)
A 		40
avr 28.3
(0) 		51.5
(3) 		20.3
(-1) 		4.9
(-3) 		19
(-1.2) 		12
(-2.1) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16318
Sequence Type Exemplar sequence
Representative Public ID R08E3.4 NCBI
Target Description R08E3.4 /REP_DB=WormBase Gene ID /WP=CE04825 /TR=Q21847 /GB=AAC48197.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029680(11), NM_001029679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029680 NCBI Caenorhabditis elegans R08E3.4b (R08E3.4) mRNA, complete cds. 11/11 None
NM_001029679 NCBI Caenorhabditis elegans R08E3.4a (R08E3.4) mRNA, complete cds. 11/11 None
SNAP00000006859 ENSEMBL cdna:SNAP chromosome:CEL140:X:4806662:4808638:-1 10/11 None
GENEFINDER00000006869 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4806662:4811493:-1 11/11 None
R08E3.4a ENSEMBL cdna:known chromosome:CEL140:X:4805989:4811493:-1 gene:R08E3.4 11/11 None
R08E3.4b ENSEMBL cdna:known chromosome:CEL140:X:4806577:4811493:-1 gene:R08E3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006860 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4807818-4811494(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08E3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28336 Hypothetical protein R08E3.4b [Caenorhabditis elegans] ref|NP_001024851.1| R08E3.4b [Caenorhabditis elegans] 0.0
blast AAV28335 Hypothetical protein R08E3.4a [Caenorhabditis elegans] ref|NP_001024850.1| R08E3.4a [Caenorhabditis elegans] 0.0
blast CAE68652 Hypothetical protein CBG14548 [Caenorhabditis briggsae] 0.0
blast T28877 hypothetical protein R08E3.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.1E-5
Sequence
Target Sequence 
>C. ELEGANS:190402_AT
atgcgccacagcggtgtgaagccatacgagtgtcgtttttgcaaaaaacgatttttcagg
aaagatcagatgcaagagcattcaatgacacatatcaaaacgggttttggtttcgactgt
ccagtatcacaatgtaacatgcagtttagtcagcacaatgcactccgagcacacttggaa
gaaacgcacacaatttcgtcaacaaatcccgcgtcatgtaagcgatgtaatttgatgttc
gccaattcgcgacgtcttctccttcatttccagacaagacatgacgattctgagtcttct
ccgaaaaaagaaaacacgccaaaaaggaagaagctgtcgaatggaaatgctttgccaatg
gatcctgcgaacatgagcataacagaacagttgcaaagaatggtgaaatcagagtttagc
cctccaaacaccgacacctccgataactccacaagttctgaattcgacaaaattccacca
agcttccctatggctaacccagatattttgttgatgtgtctaaaccaaatgaaccagttc
aatggattcggagaaaacatcccaagaccaatgctcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGCCACAGCGGTGTGAAGCCAT 298 41 517 Antisense
GTTTTGGTTTCGACTGTCCAGTATC 599 447 620 Antisense
CAATGCACTCCGAGCACACTTGGAA 222 181 672 Antisense
GTCAACAAATCCCGCGTCATGTAAG 284 463 714 Antisense
TGATGTTCGCCAATTCGCGACGTCT 105 567 749 Antisense
CTTCTCCTTCATTTCCAGACAAGAC 251 221 772 Antisense
ATGACGATTCTGAGTCTTCTCCGAA 481 45 797 Antisense
AATGCTTTGCCAATGGATCCTGCGA 30 167 862 Antisense
AATCAGAGTTTAGCCCTCCAAACAC 466 171 923 Antisense
ATTCGACAAAATTCCACCAAGCTTC 226 9 978 Antisense
AACATCCCAAGACCAATGCTCAACA 180 137 1072 Antisense
Sequence Source Affymetrix Proprietary Database