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[190401_s_at] elongation factor Tu

Description C43E11.4 /REP_DB=WormBase Gene ID /WP=CE08682 /TR=P91150 /GB=AAB37624.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor Tu
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 74      6grp_total > 54      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 711
1 2 3 4 range
A 580.4
(-0.7)
P 		710.6
(0.6)
P 		941.4
(3)
P 		359.8
(-3)
P 		582
B 624.5
(-0.1)
P 		786.3
(1.5)
P 		945.4
(3)
P 		320.6
(-3)
P 		625
C 612.8
(-1.8)
P 		694.1
(-0.9)
P 		1031.4
(3)
P 		513.1
(-3)
P 		518
avr 605.9
(-0.8) 		730.3
(0.5) 		972.7
(3) 		397.8
(-3) 		575

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 585.4
(-1.5)
P 		827.5
(3)
P 		827.6
(3)
P 		795.3
(2.4)
P 		506.5
(-3)
P 		664.6
(-0)
P 		321
B 707.3
(-1.9)
P 		773.6
(-0.4)
P 		933.4
(3)
P 		687.9
(-2.3)
P 		654.3
(-3)
P 		782.2
(-0.3)
P 		279
C 606.9
(-0.6)
P 		764.9
(2.2)
P 		809.4
(3)
P 		583
(-1)
P 		471.4
(-3)
P 		745.4
(1.9)
P 		338
avr 633.2
(-1.3) 		788.7
(1.7) 		856.8
(3) 		688.7
(-0.2) 		544.1
(-3) 		730.7
(0.6) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 211.3
(1.9)
P 		154.3
(0.2)
P 		246.1
(3)
P 		52.7
(-3)
P 		193
B 199.1
(2.2)
P 		194.2
(2)
P 		219.1
(3)
P 		68.3
(-3)
P 		151
C 202.9
(-0.4)
P 		199.5
(-0.5)
P 		359.5
(3)
P 		86.5
(-3)
P 		273
avr 204.4
(0.9) 		182.7
(0.3) 		274.9
(3) 		69.2
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 107.9
(-3)
P 		294.3
(3)
P 		180.2
(-0.7)
P 		201.7
(0)
P 		152.8
(-1.6)
P 		161.8
(-1.3)
P 		186
B 246.1
(0.5)
P 		257.5
(1.1)
P 		226.7
(-0.6)
P 		182.2
(-3)
P 		265.8
(1.6)
P 		291.7
(3)
P 		110
C 224.9
(1.9)
P 		233.4
(2.3)
P 		206
(1)
P 		117.2
(-3)
P 		152.5
(-1.4)
P 		249.5
(3)
P 		132
avr 193
(-1.4) 		261.7
(3) 		204.3
(-0.6) 		167
(-3) 		190.4
(-1.5) 		234.3
(1.3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190401_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2338
Sequence Type Exemplar sequence
Representative Public ID C43E11.4 NCBI
Target Description C43E11.4 /REP_DB=WormBase Gene ID /WP=CE08682 /TR=P91150 /GB=AAB37624.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor Tu
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058937 NCBI Caenorhabditis elegans C43E11.4 (C43E11.4) mRNA, complete cds. 11/11 None
SNAP00000031013 ENSEMBL cdna:SNAP chromosome:CEL140:I:4247762:4249261:1 11/11 None
GENEFINDER00000031033 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4247762:4249261:1 11/11 None
C43E11.4 ENSEMBL cdna:known chromosome:CEL140:I:4247757:4249383:1 gene:C43E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4247761-4249577(+) 100.0 100.0
Public Domain and Genome References
Gene Title elongation factor Tu
Ensembl C43E11.4
Entrez Gene 172024 Entrez gene
SwissProt P91150 EMBL-EBI
WormBase CE32610 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634444_AT dm
DROSGENOME1:152292_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN84843 Hypothetical protein C43E11.4 [Caenorhabditis elegans] ref|NP_491338.2| C43E11.4 [Caenorhabditis elegans] dbj|BAA31345.1| mitochondrial elongation factor Tu homologue [Caenorhabditis elegans] 0.0
blast H87753 protein C43E11.4 [imported] - Caenorhabditis elegans 0.0
blast CAE66814 Hypothetical protein CBG12179 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.6E-18
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 5.0E-78
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 3.6E-25
Sequence
Target Sequence 
>C. ELEGANS:190401_S_AT
aactgctatcactgggcgaggaacagtcatcgtcggtacactggaaagaggtgtcttgaa
aaaaggcgataaagttgaaatcaaaggagacgggcaaactcttcaaacgactgcttcgga
tatccaagtttttggcaaaagtgtgaaggaagttcgtgctggagatcattgtggagttct
gtgtagaggagttaaaggggatacagtgaagagaggaatgtgggcaggacatccaggagc
agtaacaattacgaatcgagtgaaagtggaactttatcttctctcggaggctgaaaatgg
caggaagatcggaattcggactggtttcacagacaaaatgtactgcagtacttgggatca
agttggtcgtttcgatatgagcaatgagcttctgatgccaggagaacatacttctgctac
agtactcttgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCTATCACTGGGCGAGGAACA 705 141 753 Antisense
GAGGAACAGTCATCGTCGGTACACT 398 405 770 Antisense
GACGGGCAAACTCTTCAAACGACTG 394 375 841 Antisense
AAACGACTGCTTCGGATATCCAAGT 643 125 857 Antisense
GGAAGTTCGTGCTGGAGATCATTGT 351 531 900 Antisense
GGAATGTGGGCAGGACATCCAGGAG 30 533 967 Antisense
AACTTTATCTTCTCTCGGAGGCTGA 234 139 1022 Antisense
GATCGGAATTCGGACTGGTTTCACA 53 417 1059 Antisense
GGGATCAAGTTGGTCGTTTCGATAT 168 495 1106 Antisense
GATGCCAGGAGAACATACTTCTGCT 436 415 1146 Antisense
ACTTCTGCTACAGTACTCTTGATGA 378 103 1162 Antisense
Sequence Source Affymetrix Proprietary Database