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[190399_at] ankyrin-like protein

Description Y40C5A.2 /REP_DB=WormBase Gene ID /WP=CE24256 /TR=Q9N3Y9 /GB=AAF60537.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin-like protein
Cluster 6grp_total > 22      4grp_total > 22      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 61.6
(-0.1)
P 		3.4
(-3)
A 		3.9
(-3)
A 		122.7
(3)
P 		119
B 76
(3)
P 		22.9
(-1.4)
A 		4
(-3)
A 		55.4
(1.3)
A 		72
C 87.7
(3)
P 		11.5
(-2.6)
A 		5.9
(-3)
A 		71.8
(1.8)
P 		82
avr 75.1
(2.4) 		12.6
(-2.4) 		4.6
(-3) 		83.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 60.6
(3)
A 		53.7
(2.1)
A 		48
(1.3)
A 		50.7
(1.7)
A 		42.2
(0.6)
A 		15.5
(-3)
A 		45
B 41.1
(0.5)
A 		25.8
(-1.4)
A 		61.3
(3)
A 		21.8
(-1.9)
A 		12.8
(-3)
A 		20.2
(-2.1)
A 		49
C 37.5
(-1.8)
A 		80.3
(3)
A 		47.8
(-0.6)
A 		26.4
(-3)
A 		54.4
(0.1)
A 		30
(-2.6)
A 		54
avr 46.4
(1.7) 		53.3
(3) 		52.4
(2.8) 		33
(-0.9) 		36.5
(-0.2) 		21.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 22.4
(3)
P 		0.7
(-3)
A 		1
(-2.9)
A 		18
(1.8)
P 		22
B 24.2
(3)
P 		5.7
(-1.8)
A 		0.9
(-3)
A 		11.8
(-0.2)
A 		23
C 29
(3)
P 		3.3
(-2.7)
A 		2.1
(-3)
A 		12.1
(-0.8)
P 		27
avr 25.2
(3) 		3.2
(-2.5) 		1.3
(-3) 		14
(0.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.2
(-0.1)
A 		19.1
(3)
A 		10.4
(-0.4)
A 		12.9
(0.6)
A 		12.7
(0.5)
A 		3.8
(-3)
A 		15
B 14.3
(2.6)
A 		8.6
(-0.9)
A 		14.9
(3)
A 		5.8
(-2.6)
A 		5.2
(-3)
A 		7.5
(-1.6)
A 		10
C 13.9
(-0.3)
A 		24.5
(3)
A 		12.2
(-0.8)
A 		5.3
(-3)
A 		17.6
(0.8)
A 		10
(-1.5)
A 		19
avr 13.1
(0.5) 		17.4
(3) 		12.5
(0.1) 		8
(-2.5) 		11.8
(-0.3) 		7.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10132
Sequence Type Exemplar sequence
Representative Public ID Y40C5A.2 NCBI
Target Description Y40C5A.2 /REP_DB=WormBase Gene ID /WP=CE24256 /TR=Q9N3Y9 /GB=AAF60537.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068771 NCBI Caenorhabditis elegans Osm-9 and Capsaicin receptor-Related family member (ocr-4) (ocr-4) mRNA, complete cds. 11/11 None
SNAP00000028101 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7329663:7330422:-1 11/11 None
GENEFINDER00000028111 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7329663:7332728:-1 11/11 None
Y40C5A.2 ENSEMBL cdna:known chromosome:CEL140:IV:7329663:7332779:-1 gene:Y40C5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7329668-7332734(-) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin-like protein
Gene Symbol ocr-4
Ensembl Y40C5A.2
Entrez Gene 177506 Entrez gene
SwissProt Q9N3Y9 EMBL-EBI
WormBase CE24256 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640192_AT nanchung dm
DROSGENOME1:148746_AT nanchung dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60537 Osm-9 and capsaicin receptor-related protein 4 [Caenorhabditis elegans] ref|NP_501172.1| Osm-9 and Capsaicin receptor-Related family member (ocr-4) [Caenorhabditis elegans] 0.0
blast CAE61859 Hypothetical protein CBG05837 [Caenorhabditis briggsae] 0.0
blast AAF49752 CG5842-PA [Drosophila melanogaster] gb|AAP57097.1| TRP channel protein nanchung [Drosophila melanogaster] ref|NP_648696.2| CG5842-PA [Drosophila melanogaster] 1.0E-141
blast EAL38722 ENSANGP00000028379 [Anopheles gambiae str. PEST] ref|XP_551958.1| ENSANGP00000028379 [Anopheles gambiae str. PEST] 1.0E-137
blast AAF60537 Osm-9 and capsaicin receptor-related protein 4 [Caenorhabditis elegans] ref|NP_501172.1| Osm-9 and Capsaicin receptor-Related family member (ocr-4) [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-17
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-6
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-6
Pfam IPR005821 EMBL-EBI Ion transport protein 2.1E-14
Pfam IPR005821 EMBL-EBI Ion transport protein 2.6E-17
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501172.1 6 397-416,451-473,493-512,519-538,558-580,631-653
Y40C5A.2 6 397-416,451-473,493-512,519-538,558-580,631-653
SNAP00000028101 2 3-25,70-92
GENEFINDER00000028111 5 399-421,433-455,470-489,510-532,577-599
Sequence
Target Sequence 
>C. ELEGANS:190399_AT
tggtcattgtagttggcttctctcaagcattttatgtcatattcctcggttataagagaa
gtgattctggaaatcgtgaaccaagcattatgagtaacgttgcggaaagctacgtacgga
tgtttatcatgtcactcacagagtttactgtattttttgagcaattggaagaatgtgagc
ataccgttattggaaagataacattcgtagtctatatgcttctcgtaacacttttgctca
ttaacatgcttattgctatgatgactaatacttatacagaagtctctggaaattcattag
agtggcttcgacaatggtctgcaattattctaatgatggaacaaagttttgatccagcaa
ccaggttacggtatcaaagaagatatggaatacgttttgatggaggtgaaaaactagttt
tattgttaaaagataaaatgacagaggaagaattcgagtgccagcggaagaaaatgcacg
aagagcgtcgtaaattccgtgaggaacttcgcacaaaccagagaagacggccagtattta
tatgcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCATTGTAGTTGGCTTCTCTCA 697 551 1706 Antisense
ATTTTATGTCATATTCCTCGGTTAT 478 15 1734 Antisense
GGATGTTTATCATGTCACTCACAGA 469 513 1823 Antisense
ATTCGTAGTCTATATGCTTCTCGTA 644 9 1908 Antisense
TATGCTTCTCGTAACACTTTTGCTC 115 657 1920 Antisense
GAGTGGCTTCGACAATGGTCTGCAA 23 403 2005 Antisense
GTTTTGATCCAGCAACCAGGTTACG 60 433 2051 Antisense
GAGGAAGAATTCGAGTGCCAGCGGA 391 403 2149 Antisense
GAGCGTCGTAAATTCCGTGAGGAAC 73 383 2188 Antisense
TGAGGAACTTCGCACAAACCAGAGA 65 553 2205 Antisense
GACGGCCAGTATTTATATGCAAGCA 183 377 2231 Antisense
Sequence Source Affymetrix Proprietary Database