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[190397_s_at] kinesin, kinesin-14 family

Description W02B12.7 /REP_DB=WormBase Gene ID /WP=CE03767 /TR=Q23124 /GB=CAA91398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=kinensin-like protein
Cluster 6grp_total > 97      4grp_total > 03      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 60.3
(-2.2)
A 		52.6
(-3)
P 		80.5
(-0.2)
P 		112.2
(3)
P 		60
B 80.6
(-1.2)
M 		90.8
(0.4)
P 		69.6
(-3)
A 		106.6
(3)
P 		37
C 75.8
(-1.6)
A 		52.6
(-2.9)
A 		51.2
(-3)
A 		159.6
(3)
P 		108
avr 72.2
(-2.3) 		65.3
(-3) 		67.1
(-2.8) 		126.1
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 70.3
(-0.8)
A 		38.5
(-2.7)
A 		33
(-3)
A 		92
(0.4)
P 		107.7
(1.3)
M 		136.2
(3)
P 		103
B 27.8
(-3)
A 		65.6
(-0.9)
A 		42.1
(-2.2)
P 		67.9
(-0.8)
A 		106.2
(1.3)
P 		138.1
(3)
P 		110
C 62.2
(-1.8)
P 		49.3
(-2.5)
A 		41.6
(-3)
A 		58.4
(-2)
A 		96.2
(0.2)
P 		144.1
(3)
P 		103
avr 53.4
(-2.1) 		51.1
(-2.3) 		38.9
(-3) 		72.8
(-1) 		103.4
(0.8) 		139.5
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 22
(3)
A 		11.4
(-3)
P 		21
(2.4)
P 		16.4
(-0.2)
P 		11
B 25.7
(3)
M 		22.4
(0.9)
P 		16.1
(-3)
A 		22.7
(1.1)
P 		10
C 25.1
(2.1)
A 		15.1
(-3)
A 		17.9
(-1.6)
A 		26.9
(3)
P 		12
avr 24.3
(3) 		16.3
(-3) 		18.3
(-1.5) 		22
(1.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13
(-1.7)
A 		13.7
(-1.5)
A 		7.2
(-3)
A 		23.3
(0.7)
P 		32.5
(2.8)
M 		33.2
(3)
P 		26
B 9.7
(-3)
A 		21.8
(-1.3)
A 		10.2
(-2.9)
P 		18
(-1.8)
A 		43.1
(1.8)
P 		51.5
(3)
P 		42
C 23.1
(-1)
P 		15
(-2.3)
A 		10.6
(-3)
A 		11.7
(-2.8)
A 		31.1
(0.3)
P 		48.2
(3)
P 		38
avr 15.3
(-2) 		16.8
(-1.7) 		9.3
(-3) 		17.7
(-1.6) 		35.6
(1.5) 		44.3
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190397_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2860
Sequence Type Exemplar sequence
Representative Public ID W02B12.7 NCBI
Target Description W02B12.7 /REP_DB=WormBase Gene ID /WP=CE03767 /TR=Q23124 /GB=CAA91398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=kinensin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064045(11), AB031233(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064045 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-17) (klp-17) mRNA, complete cds. 11/11 A 
AB031233 NCBI Caenorhabditis elegans klp-17 mRNA for kinesin like protein, complete cds. 9/11 None
SNAP00000002912 ENSEMBL cdna:SNAP chromosome:CEL140:II:11465901:11469009:-1 11/11 None
GENEFINDER00000002929 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11465901:11467510:-1 11/11 None
W02B12.7 ENSEMBL cdna:known chromosome:CEL140:II:11465901:11467546:-1 gene:W02B12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11465897-11469494(-) 98.73 100.0
Public Domain and Genome References
Gene Title kinesin, kinesin-14 family
Gene Symbol klp-17
Ensembl W02B12.7
Entrez Gene 174750 Entrez gene
SwissProt Q23124 EMBL-EBI
WormBase CE37934 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91398 Hypothetical protein W02B12.7 [Caenorhabditis elegans] ref|NP_496446.3| Kinesin-Like Protein family member (klp-17) [Caenorhabditis elegans] 0.0
blast BAA92262.1 kinesin like protein [Caenorhabditis elegans] 0.0
blast CAE59501 Hypothetical protein CBG02887 [Caenorhabditis briggsae] 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.1E-121
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.1E-121
Pfam IPR001752 EMBL-EBI Kinesin, motor region 3.2E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000002912 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:190397_S_AT
aactacaaattccaagcatccttcattgaagtttataacgaagaagtctatgatttgttg
gatgggaagcagaagttggaggtaaagataaatggatcgaagacgaatgtagttggactg
aagaaaatcgaaataggaaacatctccgacgttgatgtgattctgaatcttgccgattcg
caaagatccgtagcttcaacagcatctaatgagcattcatctagatctcatgcaattttc
caaatcttcgttgatgggcaaaacgcctctggtgagatggttcaatgctgtctcaacttg
gtggacttggctggttccgaacgggcgaaggagacgcaagctcgtgggaagcagttcacc
gagctcacaaacatcaaccagagcttgagcactttgaaaaaatgcatccgagctcaaatg
acgaagatgtcgcatgttccatatcgtgacagtaagctcacaatggtgcttcgcgagtat
ttgggtgcaggatcgtcgaaaacaatgttcattgctcatgcgaatcctcgtgatgttgcc
gaaaccaaacggacattggaattcacttccgagcttcgttcaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACAAATTCCAAGCATCCTTCA 28 141 1204 Antisense
GATCCGTAGCTTCAACAGCATCTAA 369 415 1388 Antisense
ATGGTTCAATGCTGTCTCAACTTGG 467 51 1480 Antisense
TTGGTGGACTTGGCTGGTTCCGAAC 7 705 1501 Antisense
AAGCTCGTGGGAAGCAGTTCACCGA 701 149 1541 Antisense
TTCACCGAGCTCACAAACATCAACC 273 685 1558 Antisense
GAAGATGTCGCATGTTCCATATCGT 190 339 1626 Antisense
AGCTCACAATGGTGCTTCGCGAGTA 14 79 1658 Antisense
AATGTTCATTGCTCATGCGAATCCT 175 165 1707 Antisense
TGCGAATCCTCGTGATGTTGCCGAA 10 585 1722 Antisense
TCACTTCCGAGCTTCGTTCAACAAA 377 621 1766 Antisense
Sequence Source Affymetrix Proprietary Database