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[190394_at] extracellular protein

Description B0545.3 /REP_DB=WormBase Gene ID /WP=CE17356 /TR=O76663 /GB=AAC26915.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=extracellular protein
Cluster 6grp_total > 09      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.6
(-2.5)
A 		3.3
(-3)
A 		4.5
(-1.1)
A 		7
(3)
A 		4
B 2.9
(-3)
A 		3.6
(0.5)
A 		3.2
(-1.5)
A 		4.1
(3)
A 		1
C 2.2
(-3)
A 		5.5
(-1.4)
A 		2.6
(-2.8)
A 		14.7
(3)
A 		13
avr 2.9
(-3) 		4.1
(-1.7) 		3.4
(-2.5) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 7.6
(3)
A 		3
(-2.8)
A 		2.8
(-3)
A 		5.2
(0)
A 		4.2
(-1.3)
A 		4.3
(-1.1)
A 		5
B 3.1
(-2.4)
A 		3
(-3)
A 		3.1
(-2.4)
A 		3.3
(-1.2)
A 		3.5
(0)
A 		4
(3)
A 		1
C 2.5
(-3)
A 		3.4
(-0.3)
A 		4.5
(3)
A 		3.5
(0)
A 		3
(-1.5)
A 		3.2
(-0.9)
A 		2
avr 4.4
(3) 		3.1
(-3) 		3.5
(-1.2) 		4
(1.2) 		3.6
(-0.7) 		3.8
(0.2) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(3)
A 		0.7
(-3)
A 		1.2
(2)
A 		1
(0)
A 		1
B 0.9
(3)
A 		0.9
(3)
A 		0.7
(-3)
A 		0.9
(3)
A 		0
C 0.7
(-3)
A 		1.6
(0)
A 		0.9
(-2.3)
A 		2.5
(3)
A 		2
avr 1
(-2) 		1.1
(-1) 		0.9
(-3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.4
(3)
A 		1.1
(0.8)
A 		0.6
(-3)
A 		1.3
(2.3)
A 		1.3
(2.3)
A 		1
(0)
A 		1
B 1.1
(0)
A 		1
(-0.8)
A 		0.7
(-3)
A 		0.9
(-1.5)
A 		1.4
(2.3)
A 		1.5
(3)
A 		1
C 0.9
(0)
A 		1
(1.5)
A 		1.1
(3)
A 		0.7
(-3)
A 		1
(1.5)
A 		1.1
(3)
A 		0
avr 1.1
(1.5) 		1
(0) 		0.8
(-3) 		1
(0) 		1.2
(3) 		1.2
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10793
Sequence Type Exemplar sequence
Representative Public ID B0545.3 NCBI
Target Description B0545.3 /REP_DB=WormBase Gene ID /WP=CE17356 /TR=O76663 /GB=AAC26915.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=extracellular protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067458 NCBI Caenorhabditis elegans B0545.3 (B0545.3) mRNA, complete cds. 11/11 None
SNAP00000044541 ENSEMBL cdna:SNAP chromosome:CEL140:IV:86890:90017:-1 11/11 None
GENEFINDER00000044545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:86729:90017:-1 11/11 None
B0545.3 ENSEMBL cdna:known chromosome:CEL140:IV:86890:88961:-1 gene:B0545.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:86889-88961(-) 100.0 100.0
Public Domain and Genome References
Gene Title extracellular protein
Ensembl B0545.3
Entrez Gene 182028 Entrez gene
SwissProt O76663 EMBL-EBI
WormBase CE17356 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26915 Hypothetical protein B0545.3 [Caenorhabditis elegans] ref|NP_499859.1| B0545.3 [Caenorhabditis elegans] 1.0E-131
blast AAC26915 Hypothetical protein B0545.3 [Caenorhabditis elegans] ref|NP_499859.1| B0545.3 [Caenorhabditis elegans] 1.0E-128
blast AAC26915 Hypothetical protein B0545.3 [Caenorhabditis elegans] ref|NP_499859.1| B0545.3 [Caenorhabditis elegans] 1.0E-109
blast CAE58496 Hypothetical protein CBG01643 [Caenorhabditis briggsae] 1.0E-109
blast CAE58496 Hypothetical protein CBG01643 [Caenorhabditis briggsae] 2.0E-95
blast CAE58496 Hypothetical protein CBG01643 [Caenorhabditis briggsae] 6.0E-79
blast CAA94349 Hypothetical protein F49E11.5 [Caenorhabditis elegans] ref|NP_502498.1| F49E11.5 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.2E-41
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.7E-38
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.2E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044545 1 77-96
Sequence
Target Sequence 
>C. ELEGANS:190394_AT
ttcgctcgcaagtggctttgggacagtatgctgttgatgatgattatcttcctccggcgg
ataatatggttaaattggattgggattgtgaactcgaattggaggctcaacaacgtgctc
aacaatgtaatttgcaaaaggagaattcgggtcgacaaatgaatggatgggacgaggttc
gcggcgaaaatgccttctatttccggaccaccgatggattggacgtttcgggggccgttt
tgaaaggaatccagagaatgggtgatgagattgcaattgcggggatcaagaacttgaagc
tttcacggtacgatagtcggattggacacgcgacacagatcctatggaaagagacacgaa
aactgggatgcgcggtacaagagtgcccggctcgacaagatggctcactcgacggacaga
aatacaatgtggctgtctgcaaatactatcccactggaaacgtgttcaaatcctccacac
caacctcaatctactcagttggtgacgttgcaagtgcctgctccgaaggaacctttgggg
atccgtcaaccggactttgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCTCGCAAGTGGCTTTGGGACA 683 695 140 Antisense
TTGATGATGATTATCTTCCTCCGGC 44 705 173 Antisense
CTTCTATTTCCGGACCACCGATGGA 705 219 333 Antisense
TGGACACGCGACACAGATCCTATGG 642 547 462 Antisense
ATGCGCGGTACAAGAGTGCCCGGCT 702 39 507 Antisense
GATGGCTCACTCGACGGACAGAAAT 270 407 538 Antisense
TGTGGCTGTCTGCAAATACTATCCC 138 555 567 Antisense
GAAACGTGTTCAAATCCTCCACACC 686 357 596 Antisense
TTGGTGACGTTGCAAGTGCCTGCTC 330 709 638 Antisense
GCCTGCTCCGAAGGAACCTTTGGGG 266 263 655 Antisense
GGGATCCGTCAACCGGACTTTGTGT 410 491 677 Antisense
Sequence Source Affymetrix Proprietary Database