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[190389_at]

Description ZK265.1 /REP_DB=WormBase Gene ID /WP=CE15289 /TR=Q94400 /GB=CAB03514.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human G9A protein like
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 07      6grp_total > 0      4grp_total > 08      6grp_total_sub > Hat      6grp_cgc > 65      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 52.4
(-3)
P 		77.4
(-0.1)
A 		65.9
(-1.4)
P 		104.6
(3)
P 		52
B 59.7
(-2.7)
P 		70.8
(-1.4)
M 		57.6
(-3)
P 		107.8
(3)
P 		50
C 75.4
(-0.4)
P 		46.2
(-3)
P 		113.5
(3)
P 		111.4
(2.8)
P 		67
avr 62.5
(-3) 		64.8
(-2.7) 		79
(-0.8) 		107.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 87.1
(-3)
A 		118.4
(1.5)
P 		122
(2)
P 		102.4
(-0.8)
P 		91.9
(-2.3)
P 		129.2
(3)
P 		42
B 92.1
(-3)
P 		135.9
(3)
P 		99
(-2.1)
P 		107.4
(-0.9)
P 		119.2
(0.7)
P 		112
(-0.3)
P 		44
C 89.4
(-3)
P 		147.3
(2.4)
P 		139.2
(1.7)
P 		101.6
(-1.9)
P 		153.6
(3)
P 		121.5
(0)
P 		64
avr 89.5
(-3) 		133.9
(3) 		120.1
(1.1) 		103.8
(-1.1) 		121.6
(1.3) 		120.9
(1.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.1
(3)
P 		16.8
(-0.6)
A 		17.2
(-0)
P 		15.3
(-3)
P 		4
B 19
(0.5)
P 		17.5
(-0.4)
M 		13.3
(-3)
P 		23
(3)
P 		10
C 25
(-0.3)
P 		13.3
(-3)
P 		39.6
(3)
P 		18.8
(-1.7)
P 		26
avr 21
(1.1) 		15.9
(-3) 		23.4
(3) 		19
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 16.1
(-3)
A 		42.1
(3)
P 		26.6
(-0.6)
P 		26
(-0.7)
P 		27.7
(-0.3)
P 		31.4
(0.5)
P 		26
B 32
(-1)
P 		45.2
(2.2)
P 		24
(-3)
P 		28.4
(-1.9)
P 		48.4
(3)
P 		41.8
(1.4)
P 		24
C 33.1
(-0.4)
P 		45
(2)
P 		35.4
(0.1)
P 		20.4
(-3)
P 		49.7
(3)
P 		40.7
(1.2)
P 		29
avr 27.1
(-2.3) 		44.1
(3) 		28.7
(-1.8) 		24.9
(-3) 		41.9
(2.3) 		38
(1.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2284
Sequence Type Exemplar sequence
Representative Public ID ZK265.1 NCBI
Target Description ZK265.1 /REP_DB=WormBase Gene ID /WP=CE15289 /TR=Q94400 /GB=CAB03514.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human G9A protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026692(11), NM_001026693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026692 NCBI Caenorhabditis elegans human KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog family member (kri-1) (kri-1) mRNA, complete cds. 11/11 None
NM_001026693 NCBI Caenorhabditis elegans human KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog family member (kri-1) (kri-1) mRNA, complete cds. 11/11 None
GENEFINDER00000032255 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8245695:8248757:-1 11/11 None
SNAP00000032245 ENSEMBL cdna:SNAP chromosome:CEL140:I:8245782:8248757:-1 11/11 None
ZK265.1a ENSEMBL cdna:known chromosome:CEL140:I:8234634:8248757:-1 gene:ZK265.1 11/11 None
ZK265.1b ENSEMBL cdna:known chromosome:CEL140:I:8236118:8248762:-1 gene:ZK265.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8245625-8248688(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK265.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03514 Hypothetical protein ZK265.1a [Caenorhabditis elegans] emb|CAI46619.1| Hypothetical protein ZK265.1a [Caenorhabditis elegans] ref|NP_001021863.1| human KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog family member (kri-1) [Caenorhabditis elegans] 0.0
blast CAI46592 Hypothetical protein ZK265.1b [Caenorhabditis elegans] emb|CAI46620.1| Hypothetical protein ZK265.1b [Caenorhabditis elegans] ref|NP_001021864.1| human KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog family member (kri-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.0021
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-9
Pfam IPR002110 EMBL-EBI Ankyrin 5.3E-5
Sequence
Target Sequence 
>C. ELEGANS:190389_AT
gaattcgccacaaatgactgccataaatgctcaaaacaaaggaggagcaacagctttaca
gtatgcagttataaatggaaatgaatacttggttgaaattctgacatctcatgcttcaat
tgatgttaatattcaaaataatgaaggctaccgacctattgattattgtggaaatcatcc
ggcaattcaaaagattctcgaattgcaaatcttcaaatctaaaatcaatgtggatacatc
tattggatcattcagtataaaatctcgatctccagaagaggcaacggtaggagaagtatt
ggatagattggcagaagaaacacaactgaatagagaacaaatgaactgttttgccctttt
tgtgtattcagagtcaatgtcacttcaacttcaaccagactccctaatagatggcaaatt
aaaagttgataagtggaatactacaatacggaagctcgttggagatattccatttgaaac
accaaggcttaagctaaaaagaaatgcctatgctactgcaagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGCCACAAATGACTGCCATA 651 323 1077 Antisense
GGAGCAACAGCTTTACAGTATGCAG 24 521 1120 Antisense
GAAATTCTGACATCTCATGCTTCAA 28 365 1171 Antisense
GGCTACCGACCTATTGATTATTGTG 422 537 1222 Antisense
TGTGGAAATCATCCGGCAATTCAAA 203 553 1243 Antisense
TGAACTGTTTTGCCCTTTTTGTGTA 66 575 1418 Antisense
TGCCCTTTTTGTGTATTCAGAGTCA 155 585 1428 Antisense
AGAGTCAATGTCACTTCAACTTCAA 70 69 1446 Antisense
ACTTCAACCAGACTCCCTAATAGAT 35 101 1464 Antisense
GGAATACTACAATACGGAAGCTCGT 240 531 1511 Antisense
GAAATGCCTATGCTACTGCAAGAAT 395 361 1577 Antisense
Sequence Source Affymetrix Proprietary Database