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[190388_at] Protein phosphatase 1

Description T16G12.7 /REP_DB=WormBase Gene ID /WP=CE00624 /TR=Q21513 /GB=CAA82973.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase 1
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 30
(-3)
A 		51.7
(-1.2)
A 		40.6
(-2.1)
A 		100.6
(3)
P 		71
B 26.6
(-2.2)
P 		26.8
(-2.1)
A 		25
(-3)
A 		36.4
(3)
A 		11
C 28.1
(-1.1)
A 		29.2
(-1)
P 		8.8
(-3)
A 		69
(3)
A 		60
avr 28.2
(-2.5) 		35.9
(-1.5) 		24.8
(-3) 		68.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 60.5
(-0.1)
A 		25.9
(-3)
A 		39.1
(-1.9)
A 		37.6
(-2)
P 		96.7
(3)
P 		60.9
(-0)
P 		71
B 48.1
(-0.7)
P 		28.6
(-3)
A 		47.3
(-0.8)
A 		42.3
(-1.4)
A 		79.2
(3)
P 		59.8
(0.7)
P 		51
C 34.4
(-3)
A 		67.7
(2.5)
P 		34.8
(-2.9)
A 		49.7
(-0.5)
A 		70.5
(3)
P 		57.6
(0.9)
P 		36
avr 47.7
(-1.9) 		40.7
(-3) 		40.4
(-3) 		43.2
(-2.6) 		82.1
(3) 		59.4
(-0.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.9
(-2.6)
A 		11.2
(-2.1)
A 		10.6
(-3)
A 		14.7
(3)
P 		4
B 8.5
(3)
P 		6.6
(-1.2)
A 		5.8
(-3)
A 		7.8
(1.4)
A 		3
C 9.3
(1.4)
A 		8.4
(0.7)
P 		3.1
(-3)
A 		11.6
(3)
A 		9
avr 9.6
(0.8) 		8.7
(-0.3) 		6.5
(-3) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.1
(-2.2)
A 		9.2
(-2.8)
A 		8.5
(-3)
A 		9.5
(-2.7)
P 		29.2
(3)
P 		14.8
(-1.2)
P 		21
B 16.7
(-1.1)
P 		9.5
(-3)
A 		11.5
(-2.5)
A 		11.2
(-2.6)
A 		32.2
(3)
P 		22.3
(0.4)
P 		23
C 12.8
(-1.3)
A 		20.6
(2.1)
P 		8.9
(-3)
A 		10
(-2.5)
A 		22.8
(3)
P 		19.3
(1.5)
P 		14
avr 13.5
(-1.7) 		13.1
(-1.9) 		9.6
(-3) 		10.2
(-2.8) 		28.1
(3) 		18.8
(-0) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6577
Sequence Type Exemplar sequence
Representative Public ID T16G12.7 NCBI
Target Description T16G12.7 /REP_DB=WormBase Gene ID /WP=CE00624 /TR=Q21513 /GB=CAA82973.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase 1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066828 NCBI Caenorhabditis elegans T16G12.7 (T16G12.7) mRNA, complete cds. 11/11 None
SNAP00000010161 ENSEMBL cdna:SNAP chromosome:CEL140:III:10038512:10039978:-1 11/11 None
GENEFINDER00000010177 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10038512:10050731:-1 11/11 None
T16G12.7 ENSEMBL cdna:known chromosome:CEL140:III:10038432:10039978:-1 gene:T16G12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10038427-10039974(-) 100.0 100.0
Public Domain and Genome References
Gene Title Protein phosphatase 1
Ensembl T16G12.7
Entrez Gene 188557 Entrez gene
SwissProt Q21513 EMBL-EBI
WormBase CE00624 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82971 Hypothetical protein T16G12.1 [Caenorhabditis elegans] ref|NP_499230.2| T16G12.1 [Caenorhabditis elegans] 0.0
blast CAE65056 Hypothetical protein CBG09901 [Caenorhabditis briggsae] 0.0
blast CAA82973 Hypothetical protein T16G12.7 [Caenorhabditis elegans] emb|CAA83616.1| Hypothetical protein T16G12.7 [Caenorhabditis elegans] ref|NP_499229.1| T16G12.7 [Caenorhabditis elegans] 1.0E-177
blast CAA82973 Hypothetical protein T16G12.7 [Caenorhabditis elegans] emb|CAA83616.1| Hypothetical protein T16G12.7 [Caenorhabditis elegans] ref|NP_499229.1| T16G12.7 [Caenorhabditis elegans] 1.0E-172
blast CAA82973 Hypothetical protein T16G12.7 [Caenorhabditis elegans] emb|CAA83616.1| Hypothetical protein T16G12.7 [Caenorhabditis elegans] ref|NP_499229.1| T16G12.7 [Caenorhabditis elegans] 1.0E-171
blast CAE65057 Hypothetical protein CBG09902 [Caenorhabditis briggsae] 1.0E-144
blast CAE65057 Hypothetical protein CBG09902 [Caenorhabditis briggsae] 1.0E-142
blast CAE75015 Hypothetical protein CBG22919 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.0E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.0E-39
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190388_AT
tctgttcctggcctacaaagtcaaatttcccgggaacttcttcatgttacgcgggaatca
cgagtgcggatccattaaccgtgtctatggatttttggatgaagttcaacggaaatatgg
agcaaagggtggaacaacaatgtggaattgctttcaaatttgttttgcgtatatgccgta
cactgctctggtctccggaagaattctttgtatgcacggtggaatcagtaaacggatgaa
caatttgaatcaacttcgcaatcttcaaagaccggttttagaagtcgctaatccgagcgt
cgaaatagatatcctctggtcagatcctgactcaacagttgatgattttgtggacagtac
ccgtggagttggtcaagtttttggagcaaaagcattgacagctataatgaataaactgga
cgttgatttggttgcacgtgcacatcaagtagttcaagatggatatgaattcttcaacaa
caaacgtcttgtcacaattttctcagctcctcattactgtggagaatttgacaatgcggc
tgcgatgatgaatgttgacaagaacttgacttgctccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTTCCTGGCCTACAAAGTCAAA 684 607 357 Antisense
CCGGGAACTTCTTCATGTTACGCGG 345 239 386 Antisense
ACGCGGGAATCACGAGTGCGGATCC 440 91 405 Antisense
GTGCGGATCCATTAACCGTGTCTAT 671 471 420 Antisense
TTTGCGTATATGCCGTACACTGCTC 503 667 520 Antisense
CTGCTCTGGTCTCCGGAAGAATTCT 679 237 539 Antisense
AGAAGTCGCTAATCCGAGCGTCGAA 389 73 636 Antisense
GATATCCTCTGGTCAGATCCTGACT 383 425 664 Antisense
GGACAGTACCCGTGGAGTTGGTCAA 200 525 708 Antisense
TGCACGTGCACATCAAGTAGTTCAA 448 577 789 Antisense
GACAAGAACTTGACTTGCTCCTTCC 254 365 913 Antisense
Sequence Source Affymetrix Proprietary Database