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[190386_at] chitinase-like repeats

Description T13H5.3 /REP_DB=WormBase Gene ID /WP=CE03654 /TR=Q22468 /GB=CAA91419.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase-like repeats
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 7.2
(-3)
A 		289.6
(3)
P 		230
(1.7)
P 		27.8
(-2.6)
A 		282
B 21.8
(-2.9)
A 		273.7
(3)
P 		271
(2.9)
P 		19.5
(-3)
A 		254
C 14
(-2.9)
A 		291
(2.8)
P 		302.3
(3)
P 		8.6
(-3)
A 		294
avr 14.3
(-3) 		284.8
(3) 		267.8
(2.6) 		18.6
(-2.9) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 75.8
(-3)
P 		297.5
(0.6)
P 		184.7
(-1.2)
P 		441.8
(3)
P 		232.7
(-0.4)
P 		111.4
(-2.4)
P 		366
B 71.5
(-3)
P 		281.4
(2.1)
P 		166.1
(-0.7)
P 		284.3
(2.2)
P 		317.5
(3)
P 		162.4
(-0.8)
P 		246
C 72.3
(-3)
A 		333.3
(3)
P 		181.4
(-0.5)
P 		301.6
(2.3)
P 		269
(1.5)
P 		173.6
(-0.7)
P 		261
avr 73.2
(-3) 		304.1
(2.1) 		177.4
(-0.7) 		342.6
(3) 		273.1
(1.5) 		149.1
(-1.3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 2.6
(-3)
A 		62.9
(3)
P 		60.1
(2.7)
P 		4.1
(-2.9)
A 		60
B 7
(-2.7)
A 		67.6
(3)
P 		62.8
(2.5)
P 		4.1
(-3)
A 		64
C 4.6
(-2.8)
A 		83.7
(1.7)
P 		105.4
(3)
P 		1.4
(-3)
A 		104
avr 4.7
(-2.9) 		71.4
(2.6) 		76.1
(3) 		3.2
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 14
(-3)
P 		105.8
(2.6)
P 		40.2
(-1.4)
P 		112
(3)
P 		70.2
(0.4)
P 		27.1
(-2.2)
P 		98
B 24.9
(-3)
P 		93.7
(1)
P 		40.3
(-2.1)
P 		75.3
(-0.1)
P 		129
(3)
P 		60.6
(-0.9)
P 		104
C 26.8
(-3)
A 		101.7
(3)
P 		46.2
(-1.4)
P 		60.6
(-0.3)
P 		87.1
(1.8)
P 		58.1
(-0.5)
P 		75
avr 21.9
(-3) 		100.4
(3) 		42.2
(-1.4) 		82.6
(1.6) 		95.4
(2.6) 		48.6
(-1) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2958
Sequence Type Exemplar sequence
Representative Public ID T13H5.3 NCBI
Target Description T13H5.3 /REP_DB=WormBase Gene ID /WP=CE03654 /TR=Q22468 /GB=CAA91419.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase-like repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063397 NCBI Caenorhabditis elegans T13H5.3 (T13H5.3) mRNA, complete cds. 11/11 None
SNAP00000035143 ENSEMBL cdna:SNAP chromosome:CEL140:II:8520818:8523359:1 11/11 None
GENEFINDER00000035147 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8520818:8523359:1 11/11 None
T13H5.3 ENSEMBL cdna:known chromosome:CEL140:II:8520833:8523393:1 gene:T13H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8520814-8523356(+) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase-like repeats
Ensembl T13H5.3
Entrez Gene 174363 Entrez gene
SwissProt Q22468 EMBL-EBI
WormBase CE36953 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91419 Hypothetical protein T13H5.3 [Caenorhabditis elegans] ref|NP_495798.2| T13H5.3 [Caenorhabditis elegans] 0.0
blast CAE61011 Hypothetical protein CBG04749 [Caenorhabditis briggsae] 0.0
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.3E-118
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.3E-118
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495798.2 1 7-26
T13H5.3 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:190386_AT
gatattatcccgtttgtgatccagatgatccaggtcatgcttgttgtggaaagtatggct
attgcggttccggtgcagaattctgttcttgtcctgaatgtattgactatggtgcagatc
caaatttaattttgaaagaaccagtgaaaccaagccaaaagatcacatggtacacatcgg
atgctggagaagggaaacgtggacgatgtggtcgagatgttccacctttagaaggagaag
cgccaacttgtaatccagatgatgctaatgctcattgttgtagtaatggaggttactgtg
gaaattcaaaggaacattgtgaatgtaatggatgtattgattttgcaaaacagagagatt
tcaaatataaaccattagaatggtggacattttctgagaatccagccaacgttggtcgtt
gtggttacaatgctccacgactttctactggaaaaattccaaaatgtgatccggattctg
aatcctactgttgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTATCCCGTTTGTGATCCAGA 436 427 1331 Antisense
GATGATCCAGGTCATGCTTGTTGTG 166 411 1354 Antisense
GTATGGCTATTGCGGTTCCGGTGCA 141 455 1383 Antisense
GGTGCAGAATTCTGTTCTTGTCCTG 529 501 1402 Antisense
GATCACATGGTACACATCGGATGCT 414 421 1491 Antisense
TGGTCGAGATGTTCCACCTTTAGAA 559 551 1539 Antisense
GAGAAGCGCCAACTTGTAATCCAGA 50 393 1565 Antisense
GAGAATCCAGCCAACGTTGGTCGTT 12 391 1726 Antisense
TGGTCGTTGTGGTTACAATGCTCCA 282 553 1743 Antisense
AATGCTCCACGACTTTCTACTGGAA 106 167 1759 Antisense
GGATTCTGAATCCTACTGTTGCAGT 292 509 1803 Antisense
Sequence Source Affymetrix Proprietary Database