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[190385_at] Zinc finger, C2H2 type

Description F21D5.9 /REP_DB=WormBase Gene ID /WP=CE03251 /TR=Q19686 /GB=CAA91038.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 28      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 44      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 123.6
(0.3)
P 		177.3
(3)
P 		119
(0)
P 		59.1
(-3)
A 		118
B 101.2
(1)
P 		114.7
(2.8)
P 		71.6
(-3)
P 		116
(3)
P 		44
C 105.5
(-0.2)
P 		80
(-3)
P 		108.8
(0.2)
P 		133.8
(3)
P 		54
avr 110.1
(-0.4) 		124
(3) 		99.8
(-3) 		103
(-2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 149.5
(3)
P 		114
(-0.2)
P 		81.9
(-3)
P 		128.9
(1.2)
P 		107.2
(-0.8)
P 		135.9
(1.8)
P 		68
B 119.8
(-2.5)
P 		116.1
(-2.8)
P 		139.6
(-0.8)
P 		186.3
(3)
P 		113.4
(-3)
P 		132.5
(-1.4)
P 		73
C 86.3
(-2.3)
P 		199.2
(3)
P 		156.3
(1)
P 		153.7
(0.8)
P 		127.4
(-0.4)
P 		72.5
(-3)
P 		127
avr 118.5
(-2.3) 		143.1
(1.1) 		125.9
(-1.3) 		156.3
(3) 		116
(-2.7) 		113.6
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 45
(3)
P 		38.5
(1.9)
P 		31.1
(0.7)
P 		8.7
(-3)
A 		36
B 32.3
(3)
P 		28.3
(1.5)
P 		16.6
(-3)
P 		24.7
(0.1)
P 		16
C 34.9
(1.8)
P 		23
(-2.8)
P 		37.9
(3)
P 		22.6
(-3)
P 		15
avr 37.4
(3) 		29.9
(0.6) 		28.5
(0.1) 		18.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 27.6
(-0.4)
P 		40.6
(3)
P 		17.8
(-3)
P 		32.7
(0.9)
P 		32.4
(0.8)
P 		33.1
(1)
P 		23
B 41.7
(0)
P 		38.6
(-1.2)
P 		33.9
(-3)
P 		49.3
(3)
P 		46.1
(1.7)
P 		49.4
(3)
P 		16
C 32
(-1.7)
P 		60.8
(3)
P 		39.8
(-0.5)
P 		30.9
(-1.9)
P 		41.2
(-0.2)
P 		24.3
(-3)
P 		37
avr 33.8
(-1.8) 		46.7
(3) 		30.5
(-3) 		37.6
(-0.4) 		39.9
(0.5) 		35.6
(-1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9338
Sequence Type Exemplar sequence
Representative Public ID F21D5.9 NCBI
Target Description F21D5.9 /REP_DB=WormBase Gene ID /WP=CE03251 /TR=Q19686 /GB=CAA91038.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069098 NCBI Caenorhabditis elegans F21D5.9 (F21D5.9) mRNA, complete cds. 11/11 None
SNAP00000028035 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8724030:8724684:1 11/11 None
GENEFINDER00000028046 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8724030:8724684:1 11/11 None
F21D5.9 ENSEMBL cdna:known chromosome:CEL140:IV:8724030:8724684:1 gene:F21D5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8724035-8724690(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl F21D5.9
Entrez Gene 184771 Entrez gene
SwissProt Q19686 EMBL-EBI
WormBase CE03251 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91038 Hypothetical protein F21D5.9 [Caenorhabditis elegans] ref|NP_501499.1| F21D5.9 [Caenorhabditis elegans] 2.0E-95
blast CAE70034 Hypothetical protein CBG16456 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:190385_AT
tcgaatctggaatcccgcagtttcagaagtgtctgaaaaccgggaagatcctggaacaaa
cctacagactcaagatgaagaatctccagacgagacacctcttgattgcacttccaagac
tgcacaaattcagtttccccaagtttttcaaaattatcttcaacttgcacccctaatgat
tcgccttcaacaacaacgtcaaatggaagagtttgcacgccgccaattcatttccacatt
atgccatgcttcaccagcaccgattactgtacctcttccacgtgtccagcaaccccgtgc
aaccacatcaaccagttcctcctcttccacgtcatcaagctctggggttactgtaccttc
tacaatgaacaatccacttgtggctaatgctcttggcagttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAATCTGGAATCCCGCAGTTTCA 148 601 42 Antisense
TCTCCAGACGAGACACCTCTTGATT 181 611 124 Antisense
GACTGCACAAATTCAGTTTCCCCAA 380 373 159 Antisense
TTCAACTTGCACCCCTAATGATTCG 596 681 200 Antisense
ATGATTCGCCTTCAACAACAACGTC 411 47 217 Antisense
AAATGGAAGAGTTTGCACGCCGCCA 366 121 242 Antisense
ATTTCCACATTATGCCATGCTTCAC 524 17 271 Antisense
GCTTCACCAGCACCGATTACTGTAC 602 305 289 Antisense
TTCCACGTCATCAAGCTCTGGGGTT 160 701 366 Antisense
TCTGGGGTTACTGTACCTTCTACAA 295 555 382 Antisense
GTGGCTAATGCTCTTGGCAGTTCTT 681 491 421 Antisense
Sequence Source Affymetrix Proprietary Database