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[190384_at] triacylgycerol lipase

Description C14E2.6 /REP_DB=WormBase Gene ID /WP=CE06833 /TR=Q17988 /GB=AAA85752.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=triacylgycerol lipase
Cluster 6grp_total > 67      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 9.5
(2.5)
A 		7.2
(-1.3)
A 		6.2
(-3)
A 		9.8
(3)
A 		4
B 9.8
(1.3)
A 		5.6
(-2.8)
A 		11.5
(3)
A 		5.4
(-3)
A 		6
C 18.2
(-1.3)
A 		50.9
(3)
A 		5.5
(-3)
A 		28
(-0)
A 		45
avr 12.5
(-0.9) 		21.2
(3) 		7.7
(-3) 		14.4
(-0) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.1
(-1.4)
A 		5
(-0.5)
A 		4.7
(-0.8)
A 		2.4
(-3)
A 		8.7
(3)
A 		2.5
(-2.9)
A 		6
B 7.2
(2.1)
A 		8
(3)
A 		5.9
(0.6)
A 		5.6
(0.3)
A 		4.6
(-0.8)
A 		2.7
(-3)
A 		5
C 6.8
(-2.5)
A 		6
(-2.6)
A 		7.2
(-2.4)
A 		4.8
(-2.7)
A 		2.9
(-3)
A 		45.8
(3)
A 		43
avr 6
(-2.2) 		6.3
(-2.1) 		5.9
(-2.2) 		4.3
(-3) 		5.4
(-2.5) 		17
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.4
(3)
A 		1.6
(-2.4)
A 		1.6
(-2.4)
A 		1.4
(-3)
A 		2
B 3.1
(3)
A 		1.4
(-2.4)
A 		2.7
(1.7)
A 		1.2
(-3)
A 		2
C 6
(-1.1)
A 		14.6
(3)
A 		1.9
(-3)
A 		4.7
(-1.7)
A 		13
avr 4.2
(0.3) 		5.9
(3) 		2.1
(-3) 		2.4
(-2.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		1.8
(0.6)
A 		1
(-1.8)
A 		0.6
(-3)
A 		2.6
(3)
A 		0.6
(-3)
A 		2
B 2.5
(2.3)
A 		2.7
(3)
A 		1.4
(-1.6)
A 		1.5
(-1.2)
A 		1.9
(0.2)
A 		1
(-3)
A 		2
C 2.5
(-2.3)
A 		1.8
(-2.6)
A 		1.8
(-2.6)
A 		1
(-3)
A 		0.9
(-3)
A 		15.3
(3)
A 		14
avr 1.9
(-1.8) 		2.1
(-1.6) 		1.4
(-2.5) 		1
(-3) 		1.8
(-2) 		5.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18300
Sequence Type Exemplar sequence
Representative Public ID C14E2.6 NCBI
Target Description C14E2.6 /REP_DB=WormBase Gene ID /WP=CE06833 /TR=Q17988 /GB=AAA85752.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=triacylgycerol lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075935 NCBI Caenorhabditis elegans C14E2.6 (C14E2.6) mRNA, complete cds. 11/11 None
SNAP00000021828 ENSEMBL cdna:SNAP chromosome:CEL140:X:1827732:1828481:-1 11/11 None
GENEFINDER00000021832 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1827732:1834911:-1 11/11 None
C14E2.6 ENSEMBL cdna:known chromosome:CEL140:X:1827732:1828481:-1 gene:C14E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1827731-1828481(-) 100.0 100.0
Public Domain and Genome References
Gene Title triacylgycerol lipase
Ensembl C14E2.6
Entrez Gene 182618 Entrez gene
SwissProt Q17988 EMBL-EBI
WormBase CE06833 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE59209 Hypothetical protein CBG02522 [Caenorhabditis briggsae] 1.0E-122
blast AAA85752 Hypothetical protein C14E2.6 [Caenorhabditis elegans] ref|NP_508336.1| C14E2.6 [Caenorhabditis elegans] 1.0E-114
blast AAC26305 Hypothetical protein H41C03.2 [Caenorhabditis elegans] ref|NP_495167.2| H41C03.2 [Caenorhabditis elegans] 1.0E-105
blast AAC26305 Hypothetical protein H41C03.2 [Caenorhabditis elegans] ref|NP_495167.2| H41C03.2 [Caenorhabditis elegans] 2.0E-73
blast CAE59209 Hypothetical protein CBG02522 [Caenorhabditis briggsae] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.6E-28
Pfam IPR002921 EMBL-EBI Lipase, class 3 9.3E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021832 3 21-43,96-113,146-168
Sequence
Target Sequence 
>C. ELEGANS:190384_AT
gagacagcttctagtccaatggctaattttcgggatgggatggatggaagattttccgct
cggcggccaaatgacagcggtcttcgtaagaaactataaagatatcctgaatttcggatt
cgataaagctgtggaagacgcagtcggtagatttccgtcctactcgtttctgatgactgg
ccattcacttggaggtgccatgacaactgtgttttcgcttcatgttgcattgaggtatcc
ggcaaagcaagttagattgtatgcatggtcggggccgagaagtggagatgagacttttgt
gaagatgctcaaggagcatgtcttcgagcaataccgaatagtccgcgatggtgattttgt
gccagacttcccattaagaatatcccaaacgttaccagctgcccatcataacacttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACAGCTTCTAGTCCAATGGCTA 179 393 15 Antisense
GGATGGAAGATTTTCCGCTCGGCGG 658 513 56 Antisense
CGCAGTCGGTAGATTTCCGTCCTAC 454 253 153 Antisense
CCGTCCTACTCGTTTCTGATGACTG 477 265 169 Antisense
GACTGGCCATTCACTTGGAGGTGCC 171 377 189 Antisense
GACAACTGTGTTTTCGCTTCATGTT 529 365 216 Antisense
ATTGTATGCATGGTCGGGGCCGAGA 229 3 270 Antisense
AGGAGCATGTCTTCGAGCAATACCG 72 57 326 Antisense
TGGTGATTTTGTGCCAGACTTCCCA 180 553 363 Antisense
AGAATATCCCAAACGTTACCAGCTG 447 75 391 Antisense
CAGCTGCCCATCATAACACTTTTGA 322 203 410 Antisense
Sequence Source Affymetrix Proprietary Database