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[190381_at]

Description C03D6.5 /REP_DB=WormBase Gene ID /WP=CE15579 /TR=Q17603 /GB=CAA99762.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=anti-silencing protein
Cluster 6grp_total > 87      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 17.2
(-3)
A 		19.9
(-2.8)
A 		17.1
(-3)
A 		105.1
(3)
A 		88
B 13
(-3)
A 		42.3
(-0.1)
A 		73.4
(3)
A 		40.7
(-0.2)
A 		60
C 45.9
(0.7)
A 		7.6
(-3)
A 		20.3
(-1.8)
A 		70.3
(3)
A 		63
avr 25.4
(-2.7) 		23.3
(-3) 		36.9
(-1.3) 		72
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 10.7
(-3)
A 		23.4
(-2.5)
A 		74.1
(-0.4)
A 		62.1
(-0.9)
A 		69.9
(-0.6)
A 		155.8
(3)
A 		145
B 33.5
(-2.1)
A 		12.2
(-3)
A 		80.1
(-0.2)
A 		75.6
(-0.4)
A 		93.9
(0.3)
A 		159.5
(3)
P 		147
C 8.1
(-3)
A 		60.5
(-0.9)
A 		58
(-1)
A 		16
(-2.7)
A 		98.2
(0.5)
A 		161
(3)
P 		153
avr 17.4
(-3) 		32
(-2.4) 		70.7
(-0.7) 		51.2
(-1.6) 		87.3
(-0) 		158.8
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.3
(-1.9)
A 		4.3
(-3)
A 		4.5
(-2.9)
A 		15.4
(3)
A 		11
B 4.1
(-3)
A 		10.5
(-0)
A 		17
(3)
A 		8.7
(-0.9)
A 		13
C 15.2
(3)
A 		2.2
(-3)
A 		7.1
(-0.7)
A 		11.9
(1.5)
A 		13
avr 8.5
(-0.3) 		5.7
(-3) 		9.5
(0.6) 		12
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 2
(-3)
A 		8.3
(-1.9)
A 		16.1
(-0.6)
A 		15.8
(-0.7)
A 		21.1
(0.2)
A 		37.9
(3)
A 		36
B 11.7
(-2.2)
A 		4.1
(-3)
A 		19.5
(-1.3)
A 		20
(-1.3)
A 		38.2
(0.7)
A 		59.5
(3)
P 		55
C 3
(-3)
A 		18.5
(-1.2)
A 		14.8
(-1.6)
A 		3.2
(-3)
A 		31.8
(0.4)
A 		53.9
(3)
P 		51
avr 5.6
(-3) 		10.3
(-2.4) 		16.8
(-1.5) 		13
(-2) 		30.4
(0.3) 		50.4
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.755
Sequence Type Exemplar sequence
Representative Public ID C03D6.5 NCBI
Target Description C03D6.5 /REP_DB=WormBase Gene ID /WP=CE15579 /TR=Q17603 /GB=CAA99762.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=anti-silencing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060166
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028824 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9666395:9668018:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060166 5/11 Cross Hyb Matching Probes None
SNAP00000028819 5/11 Cross Hyb Matching Probes None
C03D6.5 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9666325-9667949(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99762 Hypothetical protein C03D6.5 [Caenorhabditis elegans] ref|NP_492567.3| C03D6.5 [Caenorhabditis elegans] 1.0E-112
blast NP_494837 F10G7.3 [Caenorhabditis elegans] gb|AAA81128.1| Hypothetical protein F10G7.3 [Caenorhabditis elegans] 2.0E-95
blast CAE60650 Hypothetical protein CBG04296 [Caenorhabditis briggsae] 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR006818 EMBL-EBI Anti-silencing protein, ASF1-like 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190381_AT
tgacagtccattcctgatcgtcagaacggttttcgtcgagtccaataaagccctccacct
tacttccaacgaagacgattgctccggcaattataaaacttgcataaacaattcctccga
tagctttgtcgaaaatctttcccgtaaaatcgaaaccgaagatcttcgcgtcaccacatt
cccaattcggtggactgatgaggatccagtcgccgagccggttgatgaagaggcaaacaa
agtattcgatgaggatgatcttatgccattgcatgatgatgggcaggatgatgacgagga
ggaagaggacgatgatgagacgggtcccaatactgaagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAGTCCATTCCTGATCGTCAGA 283 571 474 Antisense
CTGATCGTCAGAACGGTTTTCGTCG 147 239 487 Antisense
TCGTCGAGTCCAATAAAGCCCTCCA 583 603 506 Antisense
CTCCACCTTACTTCCAACGAAGACG 190 233 526 Antisense
CCAACGAAGACGATTGCTCCGGCAA 661 273 539 Antisense
CAATTCCTCCGATAGCTTTGTCGAA 236 177 582 Antisense
AAACCGAAGATCTTCGCGTCACCAC 557 125 626 Antisense
GTCACCACATTCCCAATTCGGTGGA 323 463 643 Antisense
TCCAGTCGCCGAGCCGGTTGATGAA 400 589 678 Antisense
GAGGATGATCTTATGCCATTGCATG 285 403 724 Antisense
GAGACGGGTCCCAATACTGAAGAAG 482 391 790 Antisense
Sequence Source Affymetrix Proprietary Database