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[190377_s_at] Ribitol dehydrogenase

Description E04F6.7 /REP_DB=WormBase Gene ID /WP=CE01219 /TR=Q19062 /GB=AAA68362.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Ribitol dehydrogenase
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 72      6grp_total > 71      4grp_total > 62      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 174.7
(0.9)
P 		122.4
(-3)
P 		202.2
(3)
P 		147.5
(-1.1)
P 		80
B 141.3
(-0.6)
P 		183.9
(3)
P 		112.7
(-3)
P 		169.2
(1.8)
P 		71
C 194.8
(3)
P 		162.5
(-0.2)
P 		184.4
(2)
P 		134
(-3)
P 		61
avr 170.3
(3) 		156.3
(-1.2) 		166.4
(1.8) 		150.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 661
1 2 3 4 5 6 range
A 135.8
(-3)
P 		208.8
(-2.3)
P 		500.1
(0.3)
P 		796.3
(3)
P 		351.7
(-1)
P 		141.5
(-2.9)
P 		661
B 156.4
(-2.8)
P 		157.4
(-2.7)
P 		416.3
(0.6)
P 		602.9
(3)
P 		449
(1)
P 		137.9
(-3)
P 		465
C 176.6
(-2.8)
P 		241.8
(-2.1)
P 		299.2
(-1.5)
P 		756.5
(3)
P 		315.3
(-1.4)
P 		151.5
(-3)
P 		605
avr 156.3
(-2.9) 		202.7
(-2.4) 		405.2
(-0.3) 		718.6
(3) 		372
(-0.6) 		143.6
(-3) 		575
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 63.6
(3)
P 		26.6
(-2.3)
P 		52.9
(1.5)
P 		21.6
(-3)
P 		42
B 45.1
(2.9)
P 		45.4
(3)
P 		26.1
(-3)
P 		36
(0.1)
P 		19
C 64.5
(3)
P 		46.7
(0.5)
P 		64.3
(3)
P 		22.6
(-3)
P 		42
avr 57.7
(3) 		39.6
(-0.5) 		47.8
(1.1) 		26.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 25
(-3)
P 		74.3
(-1.3)
P 		108.9
(-0.2)
P 		202
(3)
P 		106.1
(-0.3)
P 		34.4
(-2.7)
P 		177
B 54.4
(-2.9)
P 		52.4
(-3)
P 		101.1
(-0.7)
P 		159.7
(2)
P 		182.4
(3)
P 		51.4
(-3)
P 		131
C 65.5
(-2.1)
P 		73.8
(-1.6)
P 		76.1
(-1.5)
P 		152.1
(3)
P 		102
(0)
P 		50.7
(-3)
P 		101
avr 48.3
(-2.9) 		66.8
(-2) 		95.4
(-0.6) 		171.3
(3) 		130.2
(1) 		45.5
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190377_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5178
Sequence Type Exemplar sequence
Representative Public ID E04F6.7 NCBI
Target Description E04F6.7 /REP_DB=WormBase Gene ID /WP=CE01219 /TR=Q19062 /GB=AAA68362.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Ribitol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063099 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-7) (dhs-7) mRNA, complete cds. 11/11 None
SNAP00000032897 ENSEMBL cdna:SNAP chromosome:CEL140:II:7206957:7208118:-1 11/11 None
GENEFINDER00000032904 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7206957:7208118:-1 11/11 None
E04F6.7 ENSEMBL cdna:known chromosome:CEL140:II:7206957:7208310:-1 gene:E04F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7206952-7208114(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ribitol dehydrogenase
Gene Symbol dhs-7
Ensembl E04F6.7
Entrez Gene 174183 Entrez gene
SwissProt Q19062 EMBL-EBI
WormBase CE01219 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598603_AT similar to WW domain-containing oxidoreductase isoform 1 cfa
CANINE:1587931_AT similar to WW domain-containing oxidoreductase isoform 1 cfa
CANINE_2:CFA.14943.1.A1_AT similar to WW domain-containing oxidoreductase isoform 1 cfa
CANINE_2:CFAAFFX.30659.1.S1_AT similar to WW domain-containing oxidoreductase isoform 1 cfa
CANINE_2:CFAAFFX.30659.1.S1_S_AT similar to WW domain-containing oxidoreductase isoform 1 cfa
DROSOPHILA_2:1639085_AT dm
DROSGENOME1:153511_AT dm
CHICKEN:GGA.17022.1.S1_AT WW domain containing oxidoreductase gga
CHICKEN:GGA.3285.1.S1_AT Similar to WW domain-containing oxidoreductase isoform 1; WW domain-containing protein WWOX; WW domain-containing oxidoreductase; fragile site FRA16D oxidoreductase; fragile 16D oxido reductase; putative oxidoreductase; FOR II protein ... gga
CHICKEN:GGA.3285.2.S1_AT Similar to WW domain-containing oxidoreductase isoform 1; WW domain-containing protein WWOX; WW domain-containing oxidoreductase; fragile site FRA16D oxidoreductase; fragile 16D oxido reductase; putative oxidoreductase; FOR II protein ... gga
CHICKEN:GGA.7638.2.S1_AT Similar to WW domain-containing oxidoreductase isoform 1; WW domain-containing protein WWOX; WW domain-containing oxidoreductase; fragile site FRA16D oxidoreductase; fragile 16D oxido reductase; putative oxidoreductase; FOR II protein ... gga
HG-U133_PLUS_2:210695_S_AT WW domain containing oxidoreductase hs
HG-U133A_2:210695_S_AT WW domain containing oxidoreductase hs
HG-U133A:210695_S_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:221147_X_AT WW domain containing oxidoreductase hs
HG-U133A:221147_X_AT WW domain containing oxidoreductase hs
HG-FOCUS:221147_X_AT WW domain containing oxidoreductase hs
HG-U133A_2:221147_X_AT WW domain containing oxidoreductase hs
HG-U133B:223747_X_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:223747_X_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:219077_S_AT WW domain containing oxidoreductase hs
HG-U133A:219077_S_AT WW domain containing oxidoreductase hs
HG-FOCUS:219077_S_AT WW domain containing oxidoreductase hs
HG-U133A_2:219077_S_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:223868_S_AT WW domain containing oxidoreductase hs
HG-U133B:223868_S_AT WW domain containing oxidoreductase hs
HU35KSUBC:RC_AA128041_AT WW domain containing oxidoreductase hs
HUGENEFL:U13395_AT WW domain containing oxidoreductase hs
U133_X3P:G8927394_3P_AT WW domain containing oxidoreductase hs
U133_X3P:G8927392_3P_S_AT WW domain containing oxidoreductase hs
U133_X3P:G7706522_3P_A_AT WW domain containing oxidoreductase hs
U133_X3P:G538131_3P_S_AT WW domain containing oxidoreductase hs
U133_X3P:G13699257_3P_S_AT WW domain containing oxidoreductase hs
HG-U95AV2:39995_S_AT WW domain containing oxidoreductase hs
HG-U95C:57272_AT WW domain containing oxidoreductase hs
HG-U95D:77289_AT WW domain containing oxidoreductase hs
HG-U95E:89102_I_AT WW domain containing oxidoreductase hs
HG-U95E:89104_R_AT WW domain containing oxidoreductase hs
U133_X3P:HS2.434301.1.S1_3P_AT WW domain containing oxidoreductase hs
U133_X3P:HS2.372955.1.S1_3P_AT WW domain containing oxidoreductase hs
U133_X3P:HS2.144469.1.S1_3P_X_AT WW domain containing oxidoreductase hs
U133_X3P:1562935_3P_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:1556595_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:1561692_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:1562935_AT WW domain containing oxidoreductase hs
HG-U133A_2:215526_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:215526_AT WW domain containing oxidoreductase hs
HG-U133A:215526_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:236427_AT WW domain containing oxidoreductase hs
HG-U133B:236427_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:236617_AT WW domain containing oxidoreductase hs
HG-U133B:236617_AT WW domain containing oxidoreductase hs
HG-U133_PLUS_2:237035_AT WW domain containing oxidoreductase hs
HG-U133B:237035_AT WW domain containing oxidoreductase hs
HG-U95AV2:34134_AT WW domain containing oxidoreductase hs
HG-U95C:52099_AT WW domain containing oxidoreductase hs
HG-U95C:62356_AT WW domain containing oxidoreductase hs
HG-U95E:67615_AT WW domain containing oxidoreductase hs
HG-U95E:67617_G_AT WW domain containing oxidoreductase hs
HG-U95D:69727_AT WW domain containing oxidoreductase hs
HG-U95E:70242_AT WW domain containing oxidoreductase hs
HG-U95D:72810_AT WW domain containing oxidoreductase hs
HG-U95D:78407_R_AT WW domain containing oxidoreductase hs
HG-U95E:79065_AT WW domain containing oxidoreductase hs
HG-U95D:79715_AT WW domain containing oxidoreductase hs
HG-U95D:86486_AT WW domain containing oxidoreductase hs
HG-U95D:88813_AT WW domain containing oxidoreductase hs
HG-U95E:90654_AT WW domain containing oxidoreductase hs
U133_X3P:HS.144469.0.A1_3P_AT WW domain containing oxidoreductase hs
MOUSE430_2:1431942_AT WW domain-containing oxidoreductase mm
MOE430A:1431942_AT WW domain-containing oxidoreductase mm
MOUSE430A_2:1431942_AT WW domain-containing oxidoreductase mm
MOUSE430_2:1438517_AT WW domain-containing oxidoreductase mm
MOE430B:1438517_AT WW domain-containing oxidoreductase mm
MU11KSUBB:MSA.25965.0_S_AT WW domain-containing oxidoreductase mm
MG-U74CV2:166724_AT WW domain-containing oxidoreductase mm
MOE430A:1431960_AT WW domain-containing oxidoreductase mm
MOUSE430A_2:1431960_AT WW domain-containing oxidoreductase mm
MOUSE430_2:1431960_AT WW domain-containing oxidoreductase mm
MOE430A:1416334_AT WW domain-containing oxidoreductase mm
MOUSE430A_2:1416334_AT WW domain-containing oxidoreductase mm
MOUSE430_2:1416334_AT WW domain-containing oxidoreductase mm
MG-U74BV2:115282_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
MOE430B:1442651_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
MOUSE430_2:1442651_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
MOUSE430_2:1446412_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
MOE430B:1446412_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
MG-U74CV2:170782_R_AT WW domain-containing oxidoreductase, mRNA (cDNA clone MGC:25975 IMAGE:4241066) mm
RAE230B:1396761_AT WW domain-containing oxidoreductase (predicted) rn
RAT230_2:1396761_AT WW domain-containing oxidoreductase (predicted) rn
RAE230B:1391883_AT WW domain-containing oxidoreductase (predicted) rn
RAT230_2:1391883_AT WW domain-containing oxidoreductase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68362 Dehydrogenases, short chain protein 7 [Caenorhabditis elegans] ref|NP_495500.1| DeHydrogenases, Short chain family member (dhs-7) [Caenorhabditis elegans] 0.0
blast CAE67569 Hypothetical protein CBG13097 [Caenorhabditis briggsae] 1.0E-159
blast CAE67568 Hypothetical protein CBG13096 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.3E-18
Sequence
Target Sequence 
>C. ELEGANS:190377_S_AT
acagtcgacggtttggaatcacattttgccatcaatcatctttctcattttttgttaatc
caagaactacttccaattgttcgacagtcgattccttctagaattgttttggtatcttca
tcagttcatgcaacatgtggagtttctcctgaaatgtctatagaggagaagttgaagatt
ctgtgcccagagagttcatcagatgcttcatggttccgactatattctcgatcaaaaatg
tgcaatatgttggttgcattcaaacttcacagagatgaatatcacaacggaatcagcaca
tattcagttcatccaggaaatggggttaggacgagcatattccgagattcatggcttgta
agcattgcgagtattctatcaactccatttacaaaaaatataagtcaaggagcatctaca
acagtttactgtgctggacacccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTCGACGGTTTGGAATCACATT 365 95 385 Antisense
TGCCATCAATCATCTTTCTCATTTT 632 585 411 Antisense
AACTACTTCCAATTGTTCGACAGTC 224 139 449 Antisense
GTTCGACAGTCGATTCCTTCTAGAA 207 443 463 Antisense
GTTTTGGTATCTTCATCAGTTCATG 626 447 490 Antisense
GTGCCCAGAGAGTTCATCAGATGCT 96 479 567 Antisense
GATGCTTCATGGTTCCGACTATATT 347 413 586 Antisense
TCAGCACATATTCAGTTCATCCAGG 18 625 677 Antisense
GAGCATATTCCGAGATTCATGGCTT 494 389 717 Antisense
TATTCTATCAACTCCATTTACAAAA 427 661 756 Antisense
CAGTTTACTGTGCTGGACACCCAGA 237 205 806 Antisense
Sequence Source Affymetrix Proprietary Database