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[190376_at]

Description ZK1320.8 /REP_DB=WormBase Gene ID /WP=CE01706 /TR=Q09656 /GB=CAA87046.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster 6grp_total > 80      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 8
(-2.2)
A 		16.6
(-0.8)
A 		38.4
(3)
A 		3.6
(-3)
A 		35
B 3.4
(-3)
A 		30.8
(3)
A 		6.9
(-2.2)
A 		22.6
(1.2)
A 		27
C 38.7
(1.7)
A 		45.3
(3)
A 		34
(0.7)
A 		15.8
(-3)
A 		30
avr 16.7
(-2) 		30.9
(3) 		26.4
(1.4) 		14
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 15.1
(-1.7)
A 		17.8
(-1.2)
A 		31.6
(1.3)
A 		14.1
(-1.9)
A 		40.6
(3)
A 		8.2
(-3)
A 		32
B 26.9
(0.5)
A 		11.5
(-2.1)
A 		5.8
(-3)
A 		41.9
(3)
A 		19.9
(-0.7)
A 		15.5
(-1.4)
A 		36
C 31.5
(-0.2)
A 		5.7
(-3)
A 		13.5
(-2.2)
A 		61.3
(3)
A 		5.8
(-3)
A 		27.6
(-0.6)
A 		56
avr 24.5
(-0.2) 		11.7
(-3) 		17
(-1.8) 		39.1
(3) 		22.1
(-0.7) 		17.1
(-1.8) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(-1.5)
A 		3.6
(-1)
A 		10
(3)
A 		0.5
(-3)
A 		10
B 1.1
(-3)
A 		7.6
(3)
A 		1.6
(-2.5)
A 		4.8
(0.4)
A 		7
C 12.8
(2.9)
A 		13
(3)
A 		11.9
(2.4)
A 		2.7
(-3)
A 		10
avr 5.6
(0.2) 		8.1
(3) 		7.8
(2.7) 		2.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.8
(-2.5)
A 		6.3
(-0.5)
A 		6.9
(-0.1)
A 		3.6
(-2.1)
A 		12.2
(3)
A 		2
(-3)
A 		10
B 9.3
(1.9)
A 		3.8
(-1.5)
A 		1.4
(-3)
A 		11.1
(3)
A 		8.1
(1.1)
A 		5.8
(-0.3)
A 		10
C 11.7
(2.7)
A 		1.7
(-3)
A 		3.4
(-2)
A 		12.3
(3)
A 		1.9
(-2.9)
A 		9.2
(1.2)
A 		11
avr 7.9
(1.7) 		3.9
(-3) 		3.9
(-3) 		9
(3) 		7.4
(1.1) 		5.7
(-0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3253
Sequence Type Exemplar sequence
Representative Public ID ZK1320.8 NCBI
Target Description ZK1320.8 /REP_DB=WormBase Gene ID /WP=CE01706 /TR=Q09656 /GB=CAA87046.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038584 ENSEMBL cdna:SNAP chromosome:CEL140:II:9667211:9674735:-1 11/11 None
GENEFINDER00000038593 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9673317:9674735:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9673313-9674732(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans 0.0
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 1.0E-132
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 1.0E-130
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 1.0E-130
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.7E-31
Sequence
Target Sequence 
>C. ELEGANS:190376_AT
gtctgactagtgacactcccattgagcatatctacgctgaagcccaaatgatgcctctga
aggaagaattcgaattggctaaacaacaaacttacattgccacgacaaaatctggtacgc
atccgaacaggaatctggagtcgagaaggaacaccgaaagaaggtctaacagacccaggg
agccacctctaaacctacaggaggcgaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGACTAGTGACACTCCCATTGA 530 469 803 Antisense
GTGACACTCCCATTGAGCATATCTA 53 483 812 Antisense
GAGCATATCTACGCTGAAGCCCAAA 412 389 826 Antisense
AAGCCCAAATGATGCCTCTGAAGGA 106 149 842 Antisense
AACAACAAACTTACATTGCCACGAC 281 135 884 Antisense
TTGCCACGACAAAATCTGGTACGCA 458 699 899 Antisense
AAATCTGGTACGCATCCGAACAGGA 159 117 910 Antisense
ATCCGAACAGGAATCTGGAGTCGAG 424 37 923 Antisense
AGGTCTAACAGACCCAGGGAGCCAC 128 57 964 Antisense
GAGCCACCTCTAAACCTACAGGAGG 619 383 982 Antisense
CTCTAAACCTACAGGAGGCGACCAA 408 221 989 Antisense
Sequence Source Affymetrix Proprietary Database