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[190372_at]

Description F40F12.2 /REP_DB=WormBase Gene ID /WP=CE00617 /TR=Q20212 /GB=CAA82934.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster 6grp_total > 01      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 88.5
(-1.7)
A 		51.9
(-3)
A 		79.8
(-2)
A 		218
(3)
P 		166
B 38.3
(-1.8)
A 		19.9
(-3)
A 		45.1
(-1.4)
A 		114.7
(3)
A 		95
C 72
(-1.6)
A 		37.5
(-3)
A 		44.6
(-2.7)
A 		181.1
(3)
P 		144
avr 66.3
(-1.7) 		36.4
(-3) 		56.5
(-2.1) 		171.3
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 48.3
(-0.8)
A 		36.9
(-1.6)
A 		104.4
(3)
P 		16.4
(-3)
A 		32.6
(-1.9)
A 		20.3
(-2.7)
A 		88
B 32.3
(-0.8)
A 		83.2
(3)
A 		16.6
(-2)
A 		3.8
(-3)
A 		69
(1.9)
A 		35.1
(-0.6)
A 		79
C 41.7
(-0.2)
A 		79.8
(3)
P 		11.3
(-2.7)
A 		61.4
(1.5)
A 		7.7
(-3)
A 		55.9
(1)
A 		72
avr 40.8
(-0.9) 		66.6
(3) 		44.1
(-0.4) 		27.2
(-3) 		36.4
(-1.6) 		37.1
(-1.5) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32.2
(3)
A 		11.3
(-3)
A 		20.9
(-0.2)
A 		31.9
(2.9)
P 		21
B 12.2
(-0.8)
A 		4.9
(-3)
A 		10.5
(-1.3)
A 		24.4
(3)
A 		20
C 23.8
(1)
A 		10.8
(-3)
A 		15.6
(-1.5)
A 		30.5
(3)
P 		20
avr 22.7
(1.1) 		9
(-3) 		15.7
(-1) 		28.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.9
(-1.5)
A 		13.1
(-0.1)
A 		22.7
(3)
P 		4.2
(-3)
A 		9.8
(-1.2)
A 		4.9
(-2.8)
A 		19
B 11.2
(-0.7)
A 		27.7
(2.9)
A 		4
(-2.3)
A 		1
(-3)
A 		28
(3)
A 		13.1
(-0.3)
A 		27
C 15.5
(0.6)
A 		24.4
(3)
P 		2.9
(-2.9)
A 		12.3
(-0.3)
A 		2.5
(-3)
A 		18.7
(1.4)
A 		22
avr 11.9
(-0.7) 		21.7
(3) 		9.9
(-1.5) 		5.8
(-3) 		13.4
(-0.1) 		12.2
(-0.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7135
Sequence Type Exemplar sequence
Representative Public ID F40F12.2 NCBI
Target Description F40F12.2 /REP_DB=WormBase Gene ID /WP=CE00617 /TR=Q20212 /GB=CAA82934.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F40F12.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40F12.2 F40F12.2 /REP_DB=WormBase Gene ID /WP=CE00617 /TR=Q20212 /GB=CAA82934.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Reverse transcriptase None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044194 4/11 Cross Hyb Matching Probes None
C31H5.2 4/11 Cross Hyb Matching Probes None
K07E8.4 7/11 Cross Hyb Matching Probes None
ZK380.3 6/11 Cross Hyb Matching Probes None
C08A9.2 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:190372_AT
gttgatggtgttcccataatcccctcttctactgttcgcgacttaggtcttgtcaccgat
cccaagcttaaatttgaggcccacattgccaaaattagttccctagccatgcttcgggct
aaacaaatcctaaaagcattctcttccaactcacctcacttctacgggtttcttttcaaa
acttatgtggctccaattataaattactgcgcggaggtttactctccctcccccaattca
ttgctctcgactaaacttgagaaacctcttagacactttaccaagcgcgttctgcaacga
tgcaatactaaattctcctcttatgaagatagacttagcataatgaaactcttctccacc
agacacactagaattaaagctcaaatgaaactactctatagattcctcactggatcctcc
cacttccctaggcttaatcaatttgtctcattcgctagctctaataggcaccctatgatt
ctcgttagaaaggacagttgcaccgctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATGGTGTTCCCATAATCCCCT 368 437 607 Antisense
TTCGCGACTTAGGTCTTGTCACCGA 176 697 641 Antisense
CTAAAAGCATTCTCTTCCAACTCAC 27 227 736 Antisense
CCCAATTCATTGCTCTCGACTAAAC 511 257 838 Antisense
GCATAATGAAACTCTTCTCCACCAG 466 307 944 Antisense
CTATAGATTCCTCACTGGATCCTCC 465 223 1002 Antisense
CCCACTTCCCTAGGCTTAATCAATT 102 259 1025 Antisense
AATCAATTTGTCTCATTCGCTAGCT 628 171 1042 Antisense
TTCGCTAGCTCTAATAGGCACCCTA 357 691 1057 Antisense
TAGGCACCCTATGATTCTCGTTAGA 550 653 1071 Antisense
TAGAAAGGACAGTTGCACCGCTCAC 287 653 1092 Antisense
Sequence Source Affymetrix Proprietary Database