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[190370_at] Zinc finger, C2H2 type

Description F13G3.1 /REP_DB=WormBase Gene ID /WP=CE05613 /TR=Q19418 /GB=CAA95789.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 23      4grp_total > 51      6grp_cgc > 60      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 456
1 2 3 4 range
A 227.5
(-0.1)
P 		462
(3)
P 		351.1
(1.5)
P 		11.3
(-3)
A 		451
B 219.4
(-0.1)
P 		441
(3)
P 		338.3
(1.6)
P 		9.4
(-3)
A 		432
C 248.7
(0.4)
P 		434.5
(3)
P 		344.4
(1.7)
P 		5.8
(-3)
A 		429
avr 231.9
(0.1) 		445.8
(3) 		344.6
(1.6) 		8.8
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 593
(3)
P 		460.2
(1.6)
P 		385.6
(0.8)
P 		462.4
(1.6)
P 		248.2
(-0.6)
P 		21.8
(-3)
A 		571
B 553.9
(3)
P 		383.6
(1)
P 		488.7
(2.2)
P 		453.9
(1.8)
P 		227.1
(-0.8)
P 		42.9
(-3)
A 		511
C 552.4
(3)
P 		430.7
(1.4)
P 		471.5
(2)
P 		482.2
(2.1)
P 		177.4
(-1.8)
P 		81.7
(-3)
A 		471
avr 566.4
(3) 		424.8
(1.4) 		448.6
(1.6) 		466.2
(1.8) 		217.6
(-1) 		48.8
(-3) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 82.8
(1.9)
P 		100.3
(3)
P 		91.8
(2.5)
P 		1.7
(-3)
A 		99
B 70
(0.8)
P 		108.9
(3)
P 		78.4
(1.3)
P 		2
(-3)
A 		107
C 82.3
(0.9)
P 		124.9
(3)
P 		120
(2.8)
P 		1
(-3)
A 		124
avr 78.4
(1.2) 		111.4
(3) 		96.7
(2.2) 		1.6
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 109.3
(0.9)
P 		163.7
(3)
P 		84
(-0)
P 		117.3
(1.2)
P 		74.9
(-0.4)
P 		5.3
(-3)
A 		158
B 192.7
(3)
P 		127.7
(0.8)
P 		118.7
(0.5)
P 		120.2
(0.5)
P 		92.3
(-0.4)
P 		16
(-3)
A 		177
C 204.7
(3)
P 		131.4
(0.5)
P 		120
(0.1)
P 		97
(-0.6)
P 		57.4
(-2)
P 		27.4
(-3)
A 		177
avr 168.9
(3) 		140.9
(1.9) 		107.6
(0.6) 		111.5
(0.7) 		74.9
(-0.7) 		16.2
(-3) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1391
Sequence Type Exemplar sequence
Representative Public ID F13G3.1 NCBI
Target Description F13G3.1 /REP_DB=WormBase Gene ID /WP=CE05613 /TR=Q19418 /GB=CAA95789.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059659 NCBI Caenorhabditis elegans F13G3.1 (F13G3.1) mRNA, complete cds. 11/11 None
SNAP00000006935 ENSEMBL cdna:SNAP chromosome:CEL140:I:7299403:7300702:1 11/11 None
GENEFINDER00000006953 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7299403:7300702:1 11/11 None
F13G3.1 ENSEMBL cdna:known chromosome:CEL140:I:7299403:7301373:1 gene:F13G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7299333-7300633(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol ztf-2
Ensembl F13G3.1
Entrez Gene 184429 Entrez gene
SwissProt Q19418 EMBL-EBI
WormBase CE05613 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95789 Hypothetical protein F13G3.1 [Caenorhabditis elegans] ref|NP_492060.1| F13G3.1 [Caenorhabditis elegans] 1.0E-144
blast CAE74217 Hypothetical protein CBG21899 [Caenorhabditis briggsae] 1.0E-125
blast CAG12844 unnamed protein product [Tetraodon nigroviridis] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:190370_AT
tcttcgtgttcttcagactctgatcgatgcataatttctgaaaagagaacagtgttctat
cgttgccaattgtgctcatttgaagatgaaagagtatctgtattgaacagtcatgtaagc
catcttcacaacacctccccatgtgtttgtcgatgtggcgctaaatttgaagatgtccaa
ggagcacttgctcattccaatggtccatgctcccatgttgatatgatttacaacgttatg
ccaacttatgagaaagcatctccattatccccgtgcagaagcgaatcctcatcagacagc
ggaattcagacagatcctgaagaagaagcatcgattattacatcatccctaccaactcct
caacttggatcatcacctcttctgttgtcaccaacacttccagtcactccatctttcctt
ccagacattcaatcagctctgctgagccttcagccaaatccattaatgtcattatacttg
gcatctctcctacaatcttccttgttgaatagtccaactattccaacatcttttccacaa
atcatcccaactacgatacttacaccttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTGTTCTTCAGACTCTGATC 344 617 493 Antisense
CACTTGCTCATTCCAATGGTCCATG 294 197 677 Antisense
ATGGTCCATGCTCCCATGTTGATAT 80 51 692 Antisense
TCCATTATCCCCGTGCAGAAGCGAA 636 591 753 Antisense
GATTATTACATCATCCCTACCAACT 500 429 825 Antisense
ACTCCTCAACTTGGATCATCACCTC 230 99 847 Antisense
CTTTCCTTCCAGACATTCAATCAGC 351 223 905 Antisense
GAGCCTTCAGCCAAATCCATTAATG 487 385 936 Antisense
GTCATTATACTTGGCATCTCTCCTA 644 467 960 Antisense
TAGTCCAACTATTCCAACATCTTTT 645 651 1002 Antisense
CAACTACGATACTTACACCTTCTCA 217 189 1040 Antisense
Sequence Source Affymetrix Proprietary Database