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[190368_s_at] f-spondin like protein

Description T21B6.3 /REP_DB=WormBase Gene ID /WP=CE03681 /TR=Q22631 /GB=CAA92014.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=f-spondin like protein
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_high_8_8 > 42      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2805
1 2 3 4 range
A 2853.5
(3)
P 		1711.1
(0.5)
P 		973.2
(-1.1)
P 		115.3
(-3)
P 		2738
B 2699.5
(3)
P 		1495.6
(0.3)
P 		987.7
(-0.9)
P 		49
(-3)
A 		2651
C 2578.6
(3)
P 		1585.4
(0.6)
P 		1007.8
(-0.8)
P 		66.6
(-3)
A 		2512
avr 2710.5
(3) 		1597.4
(0.5) 		989.6
(-0.9) 		77
(-3) 		2634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2596
1 2 3 4 5 6 range
A 2644.8
(3)
P 		1858.4
(1.1)
P 		662
(-1.8)
P 		476.1
(-2.2)
P 		303.9
(-2.6)
P 		144.4
(-3)
P 		2500
B 2552.9
(3)
P 		1885.4
(1.3)
P 		998.1
(-0.9)
P 		470.9
(-2.2)
P 		282.7
(-2.6)
P 		134.6
(-3)
P 		2418
C 2728.3
(3)
P 		1705.5
(0.6)
P 		909.9
(-1.2)
P 		432.3
(-2.3)
P 		334.7
(-2.5)
P 		132.3
(-3)
P 		2596
avr 2642
(3) 		1816.4
(1) 		856.7
(-1.3) 		459.8
(-2.2) 		307.1
(-2.6) 		137.1
(-3) 		2505
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1029
1 2 3 4 range
A 1039
(3)
P 		371.4
(-0.9)
P 		254.4
(-1.6)
P 		16.9
(-3)
P 		1022
B 860.9
(3)
P 		369.4
(-0.5)
P 		228.9
(-1.5)
P 		10.4
(-3)
A 		851
C 853.6
(3)
P 		455.8
(0.2)
P 		351.2
(-0.6)
P 		11.2
(-3)
A 		842
avr 917.8
(3) 		398.9
(-0.4) 		278.2
(-1.2) 		12.8
(-3) 		905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 976
1 2 3 4 5 6 range
A 487.6
(1.3)
P 		660.9
(3)
P 		144.2
(-2)
P 		120.8
(-2.2)
P 		91.7
(-2.5)
P 		35.2
(-3)
P 		626
B 888.3
(3)
P 		627.6
(1.1)
P 		242.4
(-1.6)
P 		124.7
(-2.5)
P 		114.9
(-2.5)
P 		50.2
(-3)
P 		838
C 1011.3
(3)
P 		520.4
(-0)
P 		231.6
(-1.8)
P 		86.9
(-2.7)
P 		108.3
(-2.6)
P 		44.3
(-3)
P 		967
avr 795.7
(3) 		603
(1.5) 		206.1
(-1.7) 		110.8
(-2.5) 		105
(-2.5) 		43.2
(-3) 		753
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190368_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16140
Sequence Type Exemplar sequence
Representative Public ID T21B6.3 NCBI
Target Description T21B6.3 /REP_DB=WormBase Gene ID /WP=CE03681 /TR=Q22631 /GB=CAA92014.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=f-spondin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077428 NCBI Caenorhabditis elegans T21B6.3 (T21B6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000041157 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10945389:10948961:-1 11/11 None
T21B6.3 ENSEMBL cdna:known chromosome:CEL140:X:10945076:10948892:-1 gene:T21B6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041154 3/11 Cross Hyb Matching Probes None
SNAP00000041155 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10945388-10948824(-) 89.9 100.0
Public Domain and Genome References
Gene Title f-spondin like protein
Ensembl T21B6.3
Entrez Gene 181284 Entrez gene
SwissProt Q22631 EMBL-EBI
WormBase CE31621 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92014 Hypothetical protein T21B6.3 [Caenorhabditis elegans] ref|NP_509829.2| T21B6.3 [Caenorhabditis elegans] 0.0
blast CAE70791 Hypothetical protein CBG17547 [Caenorhabditis briggsae] 0.0
blast NP_509195 C36B7.5b [Caenorhabditis elegans] gb|AAK68232.1| Hypothetical protein C36B7.5b [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.1E-11
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.9E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.4E-14
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.6E-15
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.2E-7
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.1E-4
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-10
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.1E-11
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.9E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.4E-14
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.6E-15
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.2E-7
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.1E-4
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041157 2 20-42,49-71
Sequence
Target Sequence 
>C. ELEGANS:190368_S_AT
aggtgttttcggtgatcatctctgtcaaggaccaaagactgaacaacgtgcctgtgatgg
tggaccatgctctctttggtctccatggcaagagtggtctacatgctcggcttcatgcgg
aagcggaatgaagcggagacaacgtgtctgccaatttggaactgattgccaaggaccaaa
cgaagagagccaattctgctacggacctccatgtgccgagtggacagagtggtgcgagtg
gtcaggatgctcttcaaagtgcggacccggacaacggactagaactcgtgggtgccttgg
accaaacgggcaagaagccactacttgccaaggaccaagtattgaaactaccctttgcga
agggcaatcttgctgcaactggtctgagtggtgtcactggtccatgtgcgacaaggaatg
cgggggtggtcaggtgagatatattgaatatatgttcagaacggggtgcgaatggagtcc
atgctcaacacaacttgcatgcgaagttggagtacaatctagaagccgtcaatgtgttgg
agaatccggatgtcactgcatcggtcttgccgaagaatcccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGTTTTCGGTGATCATCTCTGT 363 57 1752 Antisense
CAACGTGCCTGTGATGGTGGACCAT 390 187 1795 Antisense
TCTACATGCTCGGCTTCATGCGGAA 85 615 1849 Antisense
AGAGAGCCAATTCTGCTACGGACCT 542 69 1935 Antisense
AGGATGCTCTTCAAAGTGCGGACCC 268 57 1995 Antisense
GAAGCCACTACTTGCCAAGGACCAA 524 345 2065 Antisense
GGGCAATCTTGCTGCAACTGGTCTG 472 493 2113 Antisense
TGGTGTCACTGGTCCATGTGCGACA 489 553 2140 Antisense
GAGTCCATGCTCAACACAACTTGCA 155 399 2226 Antisense
GAATCCGGATGTCACTGCATCGGTC 9 329 2293 Antisense
TCGGTCTTGCCGAAGAATCCCAGCA 494 605 2312 Antisense
Sequence Source Affymetrix Proprietary Database