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[190367_at] zinc finger protein

Description R11G11.12 /REP_DB=WormBase Gene ID /WP=CE12762 /TR=O16954 /GB=AAC69086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 64      4grp_total > 21      6grp_cgc > 92      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 78.6
(-1.2)
P 		63.3
(-2.1)
A 		47.5
(-3)
A 		153.5
(3)
A 		106
B 73.4
(-0.6)
A 		121.4
(3)
A 		40.4
(-3)
A 		78.2
(-0.2)
A 		81
C 136.4
(2.9)
A 		45.1
(-3)
A 		62.8
(-1.9)
A 		137.6
(3)
A 		93
avr 96.1
(0.8) 		76.6
(-0.8) 		50.2
(-3) 		123.1
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 97.5
(-1.6)
A 		98.1
(-1.5)
A 		176.8
(3)
A 		108.2
(-0.9)
M 		72.5
(-3)
A 		99.9
(-1.4)
A 		104
B 119.1
(-1.3)
A 		96.4
(-3)
A 		178.3
(3)
A 		150.7
(1)
A 		108
(-2.2)
A 		139.9
(0.2)
A 		82
C 82.2
(-2.9)
A 		85.8
(-2.5)
A 		101.9
(-0.8)
A 		128.3
(2)
A 		81.3
(-3)
A 		137.2
(3)
A 		56
avr 99.6
(-1.9) 		93.4
(-2.4) 		152.3
(3) 		129.1
(0.9) 		87.3
(-3) 		125.7
(0.5) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 28.6
(3)
P 		13.7
(-2.5)
A 		12.4
(-3)
A 		22.5
(0.7)
A 		16
B 23.4
(1.1)
A 		30
(3)
A 		9.4
(-3)
A 		16.7
(-0.9)
A 		21
C 45.1
(3)
A 		13
(-3)
A 		21.9
(-1.3)
A 		23.2
(-1.1)
A 		32
avr 32.4
(3) 		18.9
(-1.6) 		14.6
(-3) 		20.8
(-0.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 18
(-3)
A 		34.9
(1.9)
A 		38.5
(3)
A 		27.4
(-0.2)
M 		21.9
(-1.9)
A 		24.3
(-1.2)
A 		21
B 41.4
(-0.2)
A 		32.1
(-3)
A 		43.3
(0.3)
A 		39.9
(-0.7)
A 		43.9
(0.5)
A 		52.2
(3)
A 		20
C 30.5
(-1.6)
A 		26.2
(-2.9)
A 		25.9
(-3)
A 		25.8
(-3)
A 		26.3
(-2.9)
A 		45.9
(3)
A 		20
avr 30
(-3) 		31.1
(-2.4) 		35.9
(0.3) 		31
(-2.4) 		30.7
(-2.6) 		40.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15746
Sequence Type Exemplar sequence
Representative Public ID R11G11.12 NCBI
Target Description R11G11.12 /REP_DB=WormBase Gene ID /WP=CE12762 /TR=O16954 /GB=AAC69086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070830 NCBI Caenorhabditis elegans R11G11.12 (R11G11.12) mRNA, complete cds. 11/11 None
SNAP00000021486 ENSEMBL cdna:SNAP chromosome:CEL140:V:517680:520122:-1 9/11 None
GENEFINDER00000021498 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:517680:521236:-1 9/11 None
R11G11.12 ENSEMBL cdna:known chromosome:CEL140:V:517014:519374:-1 gene:R11G11.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
R11G11.11 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:517013-519374(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-210
Ensembl R11G11.12
Entrez Gene 187830 Entrez gene
SwissProt O16954 EMBL-EBI
WormBase CE12762 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503231 R11G11.12 [Caenorhabditis elegans] gb|AAC69086.1| Hypothetical protein R11G11.12 [Caenorhabditis elegans] 0.0
blast CAE71063 Hypothetical protein CBG17906 [Caenorhabditis briggsae] 1.0E-117
blast CAE71063 Hypothetical protein CBG17906 [Caenorhabditis briggsae] 1.0E-113
blast CAE71065 Hypothetical protein CBG17908 [Caenorhabditis briggsae] 1.0E-106
blast CAE71065 Hypothetical protein CBG17908 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.4E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.4E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503231.1 1 398-420
R11G11.12 1 398-420
GENEFINDER00000021498 1 51-73
Sequence
Target Sequence 
>C. ELEGANS:190367_AT
aaactcatgctgtcacacgcagaggagtaatgatggatatgacaaatgttcattttgacg
caaattggctcagtggttacccatctgccgaattgaacagatttctccatgttccatccc
gatttgacatcacagctgccctggaagccctgcaacctactgaaatggaacggacattta
tgttggtccagctatcattcgagtacgctggcaaacggtgtcaaggagaaatgcttcagc
tcacagattatttccaacaagtcctagctaccgatcttcatgattattatgttaaggaac
ttcgaatggaaaaatattttgatagattggcaaaactgatgaaagtgaacaatgcgattc
agaagaaactctgggagcagagaccacgaattgagttggcaaaagtttttgacctgatta
agctggaattttctcacccggaaatcagttttatccaaaaacttcaacctattctaacgc
tcattgaagaagatgcatttttcgttaactttgcactggcttgcatgtcgttcattgtca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCATGCTGTCACACGCAGAGG 622 123 710 Antisense
AATTGGCTCAGTGGTTACCCATCTG 242 177 772 Antisense
GGTTACCCATCTGCCGAATTGAACA 47 505 784 Antisense
TGTTCCATCCCGATTTGACATCACA 120 563 819 Antisense
AAGCCCTGCAACCTACTGAAATGGA 395 149 854 Antisense
GTTGGTCCAGCTATCATTCGAGTAC 237 437 891 Antisense
GAGTACGCTGGCAAACGGTGTCAAG 494 399 910 Antisense
TATTTCCAACAAGTCCTAGCTACCG 661 661 958 Antisense
ATTAAGCTGGAATTTTCTCACCCGG 572 9 1126 Antisense
CTTCAACCTATTCTAACGCTCATTG 658 221 1171 Antisense
GGCTTGCATGTCGTTCATTGTCAAC 632 535 1227 Antisense
Sequence Source Affymetrix Proprietary Database