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[190365_at] Ogre family

Description ZK792.3 /REP_DB=WormBase Gene ID /WP=CE03824 /GEN=inx-9 /TR=Q23594 /GB=CAA92634.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ogre family
Cluster 6grp_total > 84      4grp_total > 24      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 45.4
(-3)
A 		46
(-3)
A 		163
(1.3)
M 		209.2
(3)
P 		164
B 30.6
(-3)
A 		103.5
(0.4)
A 		82
(-0.6)
A 		160.7
(3)
P 		130
C 29.1
(-3)
A 		75.7
(-1.3)
A 		190.1
(3)
P 		160.8
(1.9)
P 		161
avr 35
(-3) 		75.1
(-1.3) 		145
(1.7) 		176.9
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 23.9
(-3)
A 		27.9
(-2.9)
A 		147.4
(-0.5)
P 		149.6
(-0.5)
P 		321.5
(3)
P 		171.8
(-0)
P 		298
B 28.4
(-3)
A 		43.8
(-2.6)
A 		126.6
(-0.3)
P 		160.3
(0.6)
P 		246.6
(3)
P 		210.4
(2)
P 		218
C 33.1
(-3)
A 		61
(-2.2)
A 		150
(0.5)
P 		199
(1.9)
P 		234.7
(3)
P 		231.8
(2.9)
P 		202
avr 28.5
(-3) 		44.2
(-2.6) 		141.3
(-0.2) 		169.6
(0.5) 		267.6
(3) 		204.7
(1.4) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 16.5
(-1.8)
A 		10
(-3)
A 		42.6
(3)
M 		30.6
(0.8)
P 		33
B 9.8
(-3)
A 		25.6
(0.9)
A 		19
(-0.7)
A 		34.2
(3)
P 		24
C 9.6
(-3)
A 		21.8
(-1.7)
A 		66.3
(3)
P 		27.1
(-1.1)
P 		57
avr 12
(-3) 		19.1
(-1.6) 		42.6
(3) 		30.6
(0.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 4.4
(-3)
A 		9.9
(-2.6)
A 		32.1
(-1.2)
P 		37.9
(-0.8)
P 		97
(3)
P 		41.8
(-0.6)
P 		93
B 9.9
(-3)
A 		14.6
(-2.7)
A 		30.7
(-1.6)
P 		42.5
(-0.8)
P 		100.2
(3)
P 		78.5
(1.6)
P 		90
C 12.3
(-3)
A 		18.6
(-2.4)
A 		38.2
(-0.6)
P 		40
(-0.5)
P 		75.9
(2.8)
P 		77.6
(3)
P 		65
avr 8.9
(-3) 		14.4
(-2.6) 		33.7
(-1.2) 		40.1
(-0.7) 		91
(3) 		66
(1.2) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9254
Sequence Type Exemplar sequence
Representative Public ID ZK792.3 NCBI
Target Description ZK792.3 /REP_DB=WormBase Gene ID /WP=CE03824 /GEN=inx-9 /TR=Q23594 /GB=CAA92634.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ogre family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069809(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069809 NCBI Caenorhabditis elegans INneXin family member (inx-9) (inx-9) mRNA, complete cds. 10/11 None
SNAP00000023871 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11676354:11678058:1 9/11 None
GENEFINDER00000023877 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11676354:11678345:1 10/11 None
ZK792.3 ENSEMBL cdna:known chromosome:CEL140:IV:11676354:11678345:1 gene:ZK792.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11676359-11678351(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ogre family
Gene Symbol inx-9
Ensembl ZK792.3
Entrez Gene 191694 Entrez gene
SwissProt Q23594 EMBL-EBI
WormBase CE37466 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92634 Hypothetical protein ZK792.3 [Caenorhabditis elegans] ref|NP_502210.2| INneXin family member (inx-9) [Caenorhabditis elegans] 0.0
blast CAA92633 Hypothetical protein ZK792.2 [Caenorhabditis elegans] ref|NP_502209.1| INneXin family member (inx-8) [Caenorhabditis elegans] sp|Q23593|INX8_CAEEL Innexin-8 1.0E-170
blast T27993 hypothetical protein ZK792.2 - Caenorhabditis elegans 1.0E-170
blast CAA92634 Hypothetical protein ZK792.3 [Caenorhabditis elegans] ref|NP_502210.2| INneXin family member (inx-9) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 2.4E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502210.2 4 26-48,101-123,185-207,271-293
ZK792.3 4 26-48,101-123,185-207,271-293
SNAP00000023871 4 29-51,101-123,184-206,213-235
GENEFINDER00000023877 4 26-48,101-123,185-207,271-293
Sequence
Target Sequence 
>C. ELEGANS:190365_AT
ttctcagtctacaaccgatatgccattgatatatttttgtgatactgcaaatgaaatcaa
aattgaaactactgaaaaaagaagttccaaagtcaaagagatggctagatttatgcgctc
caagatcacgactgtccatactccatccatattttcttgcatcagaatgtactctgttta
ttcaattgtcaagatgttgtacctcatcattgcaattgctcaatttgtaattcttgcaat
ttttcttgatcaagagaaggatatgttctggggatggactctctttatgaatcttcttaa
tggaattacctgggaaactactggattattcccacgtgtcaccttctgtgactttgaaat
ccgtgagactgccggaaacaatcgtgcggaaactgttgaatgtctgattggaatcaatgt
atttaatgagaaaatcttccttttcctctggcaagctcagagtgatttggttgcatcgga
agttgccgtggagatgtacaacgactttttggaggtcagagatcaacgcatctatatcat
ctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCAGTCTACAACCGATATGCCA 500 691 387 Antisense
GATGGCTAGATTTATGCGCTCCAAG 350 407 486 Antisense
CAAGATCACGACTGTCCATACTCCA 98 183 507 Antisense
TCCATACTCCATCCATATTTTCTTG 300 591 521 Antisense
GTTGTACCTCATCATTGCAATTGCT 412 437 582 Antisense
TACTGGATTATTCCCACGTGTCACC 226 647 705 Antisense
CCACGTGTCACCTTCTGTGACTTTG 322 275 718 Antisense
GTGACTTTGAAATCCGTGAGACTGC 58 481 734 Antisense
GTGAGACTGCCGGAAACAATCGTGC 5 485 749 Antisense
TCCTTTTCCTCTGGCAAGCTCAGAG 6 593 824 Antisense
GATCAACGCATCTATATCATCTCCC 397 421 907 Antisense
Sequence Source Affymetrix Proprietary Database