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[190361_s_at] cytenine dioxygenase

Description F56F10.3 /REP_DB=WormBase Gene ID /WP=CE28465 /TR=Q20893 /GB=AAB36852.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytenine dioxygenase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 34      6grp_total > 61      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5320
1 2 3 4 range
A 2150.2
(-2.7)
P 		2349.5
(-2.4)
P 		1919.3
(-3)
P 		6164.7
(3)
P 		4245
B 2513
(-2.6)
P 		2185.1
(-2.9)
P 		2141.2
(-3)
P 		7239.7
(3)
P 		5099
C 2306.9
(-2.7)
P 		2060.1
(-3)
P 		2200.7
(-2.8)
P 		6747.6
(3)
P 		4688
avr 2323.4
(-2.7) 		2198.2
(-2.9) 		2087.1
(-3) 		6717.3
(3) 		4630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3440
1 2 3 4 5 6 range
A 1824.4
(-1.3)
P 		1462.7
(-2)
P 		4046.9
(3)
P 		3620.8
(2.2)
P 		2322.9
(-0.3)
P 		928.5
(-3)
P 		3118
B 1883.6
(-1.5)
P 		1685.3
(-2)
P 		3727.7
(2.5)
P 		3936.5
(3)
P 		2594.8
(0)
P 		1222.7
(-3)
P 		2714
C 1400.3
(-2.6)
P 		1773.7
(-1.9)
P 		3254.1
(0.9)
P 		4368.8
(3)
P 		1647.4
(-2.1)
P 		1167.3
(-3)
P 		3202
avr 1702.8
(-1.8) 		1640.6
(-1.9) 		3676.2
(2.4) 		3975.4
(3) 		2188.4
(-0.7) 		1106.2
(-3) 		2869
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1047
1 2 3 4 range
A 782.9
(1.2)
P 		510
(-2.9)
P 		501.7
(-3)
P 		902.4
(3)
P 		401
B 801.4
(-1.3)
P 		539.7
(-2.8)
P 		496.2
(-3)
P 		1542.8
(3)
P 		1047
C 763.7
(-1.1)
P 		592.3
(-3)
P 		767
(-1.1)
P 		1137.8
(3)
P 		546
avr 782.7
(-0.8) 		547.3
(-3) 		588.3
(-2.6) 		1194.3
(3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 828
1 2 3 4 5 6 range
A 336.3
(-2)
P 		520.2
(-0.5)
P 		881.3
(2.7)
P 		918.3
(3)
P 		701
(1.1)
P 		226.1
(-3)
P 		692
B 655.4
(-1)
P 		561
(-1.9)
P 		905.2
(1.5)
P 		1042.6
(2.9)
P 		1054.2
(3)
P 		455.9
(-3)
P 		598
C 519
(-1.4)
P 		541.2
(-1.2)
P 		828.2
(2.4)
P 		878.6
(3)
P 		533.1
(-1.2)
P 		390.8
(-3)
P 		488
avr 503.6
(-1.5) 		540.8
(-1.1) 		871.6
(2.2) 		946.5
(3) 		762.8
(1.1) 		357.6
(-3) 		589
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190361_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18392
Sequence Type Exemplar sequence
Representative Public ID F56F10.3 NCBI
Target Description F56F10.3 /REP_DB=WormBase Gene ID /WP=CE28465 /TR=Q20893 /GB=AAB36852.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytenine dioxygenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075767 NCBI Caenorhabditis elegans F56F10.3 (F56F10.3) mRNA, complete cds. 11/11 None
SNAP00000010358 ENSEMBL cdna:SNAP chromosome:CEL140:X:862482:863573:-1 11/11 None
GENEFINDER00000010365 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:862482:863573:-1 11/11 None
F56F10.3 ENSEMBL cdna:known chromosome:CEL140:X:862333:863850:-1 gene:F56F10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:862481-863573(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytenine dioxygenase
Ensembl F56F10.3
Entrez Gene 180434 Entrez gene
SwissProt Q20893 EMBL-EBI
WormBase CE28465 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590371_S_AT similar to Cysteine dioxygenase type I (CDO) (CDO-I) cfa
CANINE_2:CFA.572.1.S1_AT similar to Cysteine dioxygenase type I (CDO) (CDO-I) cfa
CANINE_2:CFA.572.2.S1_A_AT similar to Cysteine dioxygenase type I (CDO) (CDO-I) cfa
CANINE_2:CFAAFFX.1276.1.S1_AT similar to Cysteine dioxygenase type I (CDO) (CDO-I) cfa
CANINE_2:CFAAFFX.1276.1.S1_S_AT similar to Cysteine dioxygenase type I (CDO) (CDO-I) cfa
DROSOPHILA_2:1627912_AT dm
DROSGENOME1:147450_AT dm
CHICKEN:GGA.6921.1.S1_A_AT similar to cysteine dioxygenase gga
HG-U133_PLUS_2:204154_AT cysteine dioxygenase, type I hs
HG-U133A_2:204154_AT cysteine dioxygenase, type I hs
HG-U133A:204154_AT cysteine dioxygenase, type I hs
HG-FOCUS:204154_AT cysteine dioxygenase, type I hs
HUGENEFL:Z31357_AT cysteine dioxygenase, type I hs
U133_X3P:G4502754_3P_AT cysteine dioxygenase, type I hs
HG-U95AV2:35649_AT cysteine dioxygenase, type I hs
HG-U133_PLUS_2:243706_AT Cysteine dioxygenase, type I hs
HG-U133B:243706_AT Cysteine dioxygenase, type I hs
HG-U95E:68872_AT Cysteine dioxygenase, type I hs
U133_X3P:HS.193444.0.S1_3P_AT Cysteine dioxygenase, type I hs
MOUSE430_2:1448842_AT cysteine dioxygenase 1, cytosolic mm
MOUSE430A_2:1448842_AT cysteine dioxygenase 1, cytosolic mm
MOE430A:1448842_AT cysteine dioxygenase 1, cytosolic mm
MG-U74AV2:96346_AT cysteine dioxygenase 1, cytosolic mm
MU19KSUBA:TC19442_AT Cysteine dioxygenase 1, cytosolic, mRNA (cDNA clone MGC:18800 IMAGE:4194939) mm
RT-U34:E03229CDS_S_AT cytosolic cysteine dioxygenase 1 rn
RG-U34A:E03229CDS_S_AT cytosolic cysteine dioxygenase 1 rn
RT-U34:RC_AA942685_AT cytosolic cysteine dioxygenase 1 rn
RG-U34A:RC_AA942685_AT cytosolic cysteine dioxygenase 1 rn
RAE230A:1367755_AT cytosolic cysteine dioxygenase 1 rn
RAT230_2:1367755_AT cytosolic cysteine dioxygenase 1 rn
Protein Similarities
Method ID Description E-Value
blast AAB36852 Hypothetical protein F56F10.3 [Caenorhabditis elegans] ref|NP_508168.1| F56F10.3 [Caenorhabditis elegans] sp|Q20893|CDO_CAEEL Putative cysteine dioxygenase (CDO) 1.0E-110
blast Q60TI7 Putative cysteine dioxygenase (CDO) emb|CAE73080.1| Hypothetical protein CBG20456 [Caenorhabditis briggsae] 2.0E-99
blast XP_396935 PREDICTED: similar to ENSANGP00000015678 [Apis mellifera] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR010300 EMBL-EBI Cysteine dioxygenase type I 5.2E-101
Sequence
Target Sequence 
>C. ELEGANS:190361_S_AT
gtggcgaagatttgccattttcgatatgaacaaatacacaagaaacctagtggatgttgg
aaatggaaagtacaacttgatgattttgtgttggggccccggtatggctagcagtgttca
cgatcatactgatgctcattgctttgtgaaaattcttgatggagagctcactgagaccaa
atatgcctggccaagaaaacgacacgtgccacttgatatttcagaaaataagacttatgg
aatgaatggagtttcctatatgaatgatgagcttggtcttcatagaatggaaaatttgag
tcactcaaacggagctgtctctcttcacttgtacatccctccatatagtacttgcaatgc
attcgatgagagaaccggaaagaaaacgcaatgcaccgtcacattctactcaaagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCGAAGATTTGCCATTTTCGAT 566 491 114 Antisense
TGATTTTGTGTTGGGGCCCCGGTAT 681 563 194 Antisense
GGTATGGCTAGCAGTGTTCACGATC 386 505 214 Antisense
GATCATACTGATGCTCATTGCTTTG 157 421 235 Antisense
GAGCTCACTGAGACCAAATATGCCT 598 387 277 Antisense
AATATGCCTGGCCAAGAAAACGACA 118 173 293 Antisense
GACACGTGCCACTTGATATTTCAGA 613 367 314 Antisense
ACTCAAACGGAGCTGTCTCTCTTCA 70 97 416 Antisense
ACATCCCTCCATATAGTACTTGCAA 566 105 446 Antisense
GAAAACGCAATGCACCGTCACATTC 143 355 495 Antisense
CACCGTCACATTCTACTCAAAGTAC 207 201 507 Antisense
Sequence Source Affymetrix Proprietary Database