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[190357_at] Ank repeat (8 domains)

Description T28D6.4 /REP_DB=WormBase Gene ID /WP=CE16523 /TR=O18152 /GB=CAB03446.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat (8 domains)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 57      4grp_high_8_8 > 26      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 356.3
(3)
P 		307.1
(0.1)
P 		253.3
(-3)
P 		277.1
(-1.6)
P 		103
B 271.7
(3)
P 		268.3
(2.6)
P 		217.3
(-3)
P 		228.3
(-1.8)
P 		54
C 315.8
(3)
P 		244.7
(-0.2)
P 		181.5
(-3)
P 		240.1
(-0.4)
P 		134
avr 314.6
(3) 		273.4
(0.5) 		217.4
(-3) 		248.5
(-1.1) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 356.4
(3)
P 		332
(2.2)
P 		278.8
(0.4)
P 		313.5
(1.6)
P 		239.1
(-0.9)
P 		174.8
(-3)
P 		182
B 316.7
(2.3)
P 		337.2
(3)
P 		300.6
(1.7)
P 		309.6
(2)
P 		263.6
(0.3)
P 		173
(-3)
P 		164
C 378
(3)
P 		362.2
(2.6)
P 		283.3
(0.6)
P 		292.9
(0.8)
P 		229.7
(-0.8)
P 		145.9
(-3)
P 		232
avr 350.4
(3) 		343.8
(2.8) 		287.6
(1) 		305.3
(1.5) 		244.1
(-0.4) 		164.6
(-3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 129.7
(3)
P 		66.7
(-1.2)
P 		66.2
(-1.3)
P 		40.6
(-3)
P 		89
B 86.7
(3)
P 		66.3
(-0.2)
P 		50.4
(-2.7)
P 		48.7
(-3)
P 		38
C 104.5
(3)
P 		70.4
(-0.2)
P 		63.3
(-0.9)
P 		40.5
(-3)
P 		64
avr 107
(3) 		67.8
(-0.7) 		60
(-1.4) 		43.3
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 65.7
(-1.2)
P 		118.1
(3)
P 		60.7
(-1.6)
P 		79.5
(-0.1)
P 		72.2
(-0.6)
P 		42.6
(-3)
P 		76
B 110.2
(2.7)
P 		112.2
(3)
P 		73
(-1.9)
P 		82
(-0.8)
P 		107.1
(2.4)
P 		64.5
(-3)
P 		48
C 140.1
(3)
P 		110.5
(1.1)
P 		72.1
(-1.5)
P 		58.9
(-2.3)
P 		74.3
(-1.3)
P 		48.8
(-3)
P 		91
avr 105.3
(2.2) 		113.6
(3) 		68.6
(-1.4) 		73.5
(-0.9) 		84.5
(0.2) 		52
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6595
Sequence Type Exemplar sequence
Representative Public ID T28D6.4 NCBI
Target Description T28D6.4 /REP_DB=WormBase Gene ID /WP=CE16523 /TR=O18152 /GB=CAB03446.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat (8 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067060 NCBI Caenorhabditis elegans T28D6.4 (T28D6.4) mRNA, complete cds. 11/11 None
SNAP00000023473 ENSEMBL cdna:SNAP chromosome:CEL140:III:11360364:11365910:1 11/11 None
GENEFINDER00000023479 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11360364:11365910:1 11/11 None
T28D6.4.1 ENSEMBL cdna:known chromosome:CEL140:III:11360330:11366051:1 gene:T28D6.4 11/11 None
T28D6.4.2 ENSEMBL cdna:known chromosome:CEL140:III:11360332:11366051:1 gene:T28D6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11360359-11365906(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat (8 domains)
Ensembl T28D6.4
Entrez Gene 176566 Entrez gene
SwissProt O18152 EMBL-EBI
WormBase CE16523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03446 Hypothetical protein T28D6.4 [Caenorhabditis elegans] ref|NP_499461.1| T28D6.4 [Caenorhabditis elegans] 0.0
blast CAE67639 Hypothetical protein CBG13198 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 37.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.0017
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-5
Pfam IPR002110 EMBL-EBI Ankyrin 2.6E-9
Pfam IPR002110 EMBL-EBI Ankyrin 3.6E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.078
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 8.0E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.0085
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002110 EMBL-EBI Ankyrin 0.2
Pfam IPR002110 EMBL-EBI Ankyrin 0.38
Pfam IPR002110 EMBL-EBI Ankyrin 2.9E-5
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.39
Sequence
Target Sequence 
>C. ELEGANS:190357_AT
gagccaacgggaccacgatggcaccccactagcccacaccctaatcctctccaatctgat
cttcgtggccgaggtttatctaggccatggtgccaactcatccgactcggatgctcatgg
ccgaacttgtgtacacgtggtcgcttcgacgaatgacgtggcggcagcgaaaatgctgaa
gaggattggtggagtaaattttgaggcagttgatagaggtgggcgtacagctttgatgac
tgcagtttgggcgaaacacgtggcgatttcggtgttcttgttggatagttgtggagttga
cccgaatcgaacggatcgacagggtgccactgctctctccattgccgcgcaaatcggcga
ccgcgatcttgtcaacctgctcctcaaatttggcgccgaaccagagatcaaagactctat
gggacgaaccgccatggatgtggccatgatttctggcaacgagccaatagtttctctgct
ccaatctgtaaatggctcatccggatcatctggaattggctcaagtgtccccaatagccc
actcgacgccagtaaacagcgtatcctgaaagccacatcatcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAACGGGACCACGATGGCACC 317 383 2367 Antisense
CCAATCTGATCTTCGTGGCCGAGGT 263 277 2417 Antisense
TCTAGGCCATGGTGCCAACTCATCC 471 613 2445 Antisense
TGCTCATGGCCGAACTTGTGTACAC 528 579 2478 Antisense
GAGGTGGGCGTACAGCTTTGATGAC 45 403 2582 Antisense
CACGTGGCGATTTCGGTGTTCTTGT 606 197 2623 Antisense
TCCATTGCCGCGCAAATCGGCGACC 432 587 2704 Antisense
GGGACGAACCGCCATGGATGTGGCC 522 489 2787 Antisense
TAAATGGCTCATCCGGATCATCTGG 101 641 2855 Antisense
TTGGCTCAAGTGTCCCCAATAGCCC 627 707 2882 Antisense
GTATCCTGAAAGCCACATCATCACT 393 455 2927 Antisense
Sequence Source Affymetrix Proprietary Database