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[190354_at] ATP-dependent protease

Description R13H4.6 /REP_DB=WormBase Gene ID /WP=CE12810 /TR=P90952 /GB=CAB04658.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP-dependent protease
Cluster 6grp_total > 30      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.7
(-3)
A 		8
(-2.7)
A 		25.1
(-0.2)
A 		46.8
(3)
A 		41
B 7.4
(1.4)
A 		4.9
(-3)
A 		8.3
(3)
A 		6.9
(0.5)
A 		3
C 6.7
(-2.6)
A 		36.7
(1.6)
A 		4.2
(-3)
A 		46.6
(3)
A 		42
avr 6.6
(-3) 		16.5
(-0.8) 		12.5
(-1.7) 		33.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9.2
(-2.2)
A 		9.4
(-2.1)
A 		35.6
(3)
A 		33.8
(2.6)
A 		5
(-3)
A 		9.5
(-2.1)
A 		31
B 6
(-2.7)
A 		7.8
(-2.2)
A 		25.8
(3)
A 		4.9
(-3)
A 		9
(-1.8)
A 		5.3
(-2.9)
A 		21
C 5.9
(-2.7)
A 		34.5
(3)
A 		5.8
(-2.7)
A 		4.5
(-3)
A 		4.4
(-3)
A 		7.7
(-2.3)
A 		30
avr 7
(-2.7) 		17.2
(1.1) 		22.4
(3) 		14.4
(0.1) 		6.1
(-3) 		7.5
(-2.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(-2.5)
A 		1.7
(-3)
A 		6.6
(2.8)
A 		6.8
(3)
A 		5
B 2.4
(3)
A 		1.2
(-3)
A 		1.9
(0.5)
A 		1.5
(-1.5)
A 		1
C 2.2
(-2.5)
A 		10.6
(3)
A 		1.5
(-3)
A 		7.9
(1.2)
A 		9
avr 2.2
(-3) 		4.5
(1.3) 		3.3
(-0.9) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.7
(-2.8)
A 		3.3
(-1.5)
A 		7.8
(2.3)
A 		8.6
(3)
A 		1.5
(-3)
A 		2.3
(-2.3)
A 		7
B 2.1
(-2)
A 		2.6
(-1.4)
A 		6.3
(3)
A 		1.3
(-3)
A 		3.7
(-0.1)
A 		2
(-2.2)
A 		5
C 2.2
(-2.2)
A 		10.5
(3)
A 		1.5
(-2.6)
A 		0.9
(-3)
A 		1.4
(-2.7)
A 		2.6
(-1.9)
A 		10
avr 2
(-3) 		5.5
(3) 		5.2
(2.5) 		3.6
(-0.3) 		2.2
(-2.7) 		2.3
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12819
Sequence Type Exemplar sequence
Representative Public ID R13H4.6 NCBI
Target Description R13H4.6 /REP_DB=WormBase Gene ID /WP=CE12810 /TR=P90952 /GB=CAB04658.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP-dependent protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073586 NCBI Caenorhabditis elegans R13H4.6 (R13H4.6) mRNA, complete cds. 11/11 None
R13H4.6 ENSEMBL cdna:known chromosome:CEL140:V:11866340:11867501:1 gene:R13H4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036685 7/11 Cross Hyb Matching Probes None
GENEFINDER00000036695 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11866339-11867501(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP-dependent protease
Ensembl R13H4.6
Entrez Gene 187873 Entrez gene
SwissProt P90952 EMBL-EBI
WormBase CE12810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04658 Hypothetical protein R13H4.6 [Caenorhabditis elegans] ref|NP_505987.1| R13H4.6 [Caenorhabditis elegans] 1.0E-139
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:190354_AT
gaaaaaggtccgattgtccctatcttttgcacatttttcaagttcaaaaccgactcgttt
cattgttacgcattggaaagtattggagaagacatgaaagagggtgcgagactggcttat
gacgctgttacatttaatctctgttcaatgggagtatcgcaacatccaagagaggtccgt
gttcaatattatgccgagtctcacttagacagaaaatctgctattttgacgactgcactt
gggctgatggctgcattcacaggcatgatcattccagattacattgcggccactggaaaa
ctcgatttacctggaaatgtaggtgatattgaactcaaaattgatgctgcgatccagaat
aagaagactatagtaattgtgccaaaggataattttgaatcgatttccaaggatatgaaa
gcacagatcaatggtgtaccggtgtcgcatttgctagaagctttccaagtggtgtcacaa
caaggaaaaaaaaagataattgtcaattgttcccactctttttttgccaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAAGGTCCGATTGTCCCTATCT 242 353 181 Antisense
AACCGACTCGTTTCATTGTTACGCA 668 141 228 Antisense
GAGACTGGCTTATGACGCTGTTACA 526 393 288 Antisense
GTTCAATATTATGCCGAGTCTCACT 505 445 361 Antisense
GCTATTTTGACGACTGCACTTGGGC 659 303 400 Antisense
TGGGCTGATGGCTGCATTCACAGGC 251 555 420 Antisense
CATTCCAGATTACATTGCGGCCACT 536 217 450 Antisense
AATGGTGTACCGGTGTCGCATTTGC 295 163 610 Antisense
GAAGCTTTCCAAGTGGTGTCACAAC 694 341 637 Antisense
TAATTGTCAATTGTTCCCACTCTTT 151 635 677 Antisense
TTCCCACTCTTTTTTTGCCAAAATG 362 697 690 Antisense
Sequence Source Affymetrix Proprietary Database