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[190352_s_at]

Description T08B2.7 /REP_DB=WormBase Gene ID /WP=CE13431 /CHR=1 /FEA=Sanger Annotation /DEF=3-hydroxyacyl-CoA dehydrogenase (ST.LOUIS) protein_id:AAG00020.1
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 65      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 47      6grp_total > 57      4grp_total > 07      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 659
1 2 3 4 range
A 3579.5
(3)
P 		2925
(-3)
P 		3198.5
(-0.5)
P 		3256.4
(0)
P 		655
B 3415.6
(1.9)
P 		2920.2
(-3)
P 		3447.1
(2.2)
P 		3526.4
(3)
P 		606
C 3240.5
(0.3)
P 		2954.4
(-3)
P 		3324.5
(1.3)
P 		3470.3
(3)
P 		516
avr 3411.9
(2.9) 		2933.2
(-3) 		3323.4
(1.8) 		3417.7
(3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2003
1 2 3 4 5 6 range
A 4000.9
(1.1)
P 		3025.2
(-2.4)
P 		3692.9
(-0)
P 		3391.2
(-1.1)
P 		2859.2
(-3)
P 		4539.1
(3)
P 		1680
B 3865.3
(2.3)
P 		3010.9
(-1.4)
P 		3304.7
(-0.1)
P 		3998.7
(2.9)
P 		2629.6
(-3)
P 		4016.4
(3)
P 		1387
C 3978.9
(2.1)
P 		3136.4
(-0.9)
P 		4221.7
(3)
P 		4088.8
(2.5)
P 		2536.5
(-3)
P 		3936.8
(2)
P 		1685
avr 3948.4
(2.1) 		3057.5
(-1.5) 		3739.8
(1.3) 		3826.2
(1.6) 		2675.1
(-3) 		4164.1
(3) 		1489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 827
1 2 3 4 range
A 1303.3
(3)
P 		634.9
(-1.9)
P 		836.1
(-0.4)
P 		476.7
(-3)
P 		827
B 1089.2
(3)
P 		721.2
(-3)
P 		798.8
(-1.7)
P 		751.5
(-2.5)
P 		368
C 1072.7
(2.1)
P 		849.4
(-0.2)
P 		1158.7
(3)
P 		585.1
(-3)
P 		574
avr 1155.1
(3) 		735.2
(-1.6) 		931.2
(0.6) 		604.4
(-3) 		551

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 760
1 2 3 4 5 6 range
A 737.5
(-3)
P 		1075.9
(2.5)
P 		804.2
(-1.9)
P 		860.1
(-1)
P 		862.8
(-1)
P 		1105.1
(3)
P 		368
B 1344.9
(1.7)
P 		1002.2
(-1.3)
P 		802.5
(-3)
P 		1059.1
(-0.8)
P 		1068.4
(-0.7)
P 		1497.7
(3)
P 		695
C 1474.8
(3)
P 		957
(-1.8)
P 		1074.5
(-0.7)
P 		822.3
(-3)
P 		820.8
(-3)
P 		1317.9
(1.6)
P 		654
avr 1185.7
(1.2) 		1011.7
(-1.3) 		893.7
(-3) 		913.8
(-2.7) 		917.3
(-2.7) 		1306.9
(3) 		413
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190352_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1597
Sequence Type Exemplar sequence
Representative Public ID T08B2.7 NCBI
Target Description T08B2.7 /REP_DB=WormBase Gene ID /WP=CE13431 /CHR=1 /FEA=Sanger Annotation /DEF=3-hydroxyacyl-CoA dehydrogenase (ST.LOUIS) protein_id:AAG00020.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170875(11), NM_059388(11), NM_059389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170875 NCBI Caenorhabditis elegans T08B2.7c (T08B2.7) mRNA, complete cds. 11/11 None
NM_059388 NCBI Caenorhabditis elegans T08B2.7a (T08B2.7) mRNA, complete cds. 11/11 None
NM_059389 NCBI Caenorhabditis elegans T08B2.7b (T08B2.7) mRNA, complete cds. 11/11 None
SNAP00000035002 ENSEMBL cdna:SNAP chromosome:CEL140:I:6215343:6217878:-1 11/11 None
GENEFINDER00000035018 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6215452:6218312:-1 11/11 None
T08B2.7c ENSEMBL cdna:known chromosome:CEL140:I:6215090:6219290:-1 gene:T08B2.7 11/11 None
T08B2.7a.1 ENSEMBL cdna:known chromosome:CEL140:I:6215095:6219242:-1 gene:T08B2.7 11/11 None
T08B2.7a.2 ENSEMBL cdna:known chromosome:CEL140:I:6215193:6219242:-1 gene:T08B2.7 11/11 None
T08B2.7b.2 ENSEMBL cdna:known chromosome:CEL140:I:6215343:6218082:-1 gene:T08B2.7 11/11 None
T08B2.7b.1 ENSEMBL cdna:known chromosome:CEL140:I:6215343:6218074:-1 gene:T08B2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6215271-6219171(-) 100.0 100.0
Public Domain and Genome References
Ensembl T08B2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740864 T08B2.7c [Caenorhabditis elegans] gb|AAL77185.1| Hypothetical protein T08B2.7c [Caenorhabditis elegans] 0.0
blast NP_491789 T08B2.7a [Caenorhabditis elegans] gb|AAK21462.1| Hypothetical protein T08B2.7a [Caenorhabditis elegans] 0.0
blast NP_491790 T08B2.7b [Caenorhabditis elegans] gb|AAK21464.1| Hypothetical protein T08B2.7b [Caenorhabditis elegans] 0.0
blast CAE67139 Hypothetical protein CBG12562 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 6.4E-37
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.1E-7
Pfam IPR001753 EMBL-EBI Enoyl-CoA hydratase/isomerase 1.6E-60
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5.9E-86
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 6.4E-37
Pfam IPR001753 EMBL-EBI Enoyl-CoA hydratase/isomerase 1.6E-60
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5.9E-86
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 6.4E-37
Pfam IPR001753 EMBL-EBI Enoyl-CoA hydratase/isomerase 1.6E-60
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5.9E-86
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.1E-7
Sequence
Target Sequence 
>C. ELEGANS:190352_S_AT
caaattcggattcccagtcggagccgcgacattggctgatgaagttggactcgatgtcgc
cgagcatgtcgctcaattccttggaaaagctttgggaccacgacttggtggaggatccgc
tgatttgttgtccgaattggtgaaggctggtcacaagggacgtaaaactggaaagggtat
ctttgtatatggagacggaaagaagggaagcaagaaggttaacgatgaagccaccaagtt
gcttcaaaagtacaagttgacaccaaacgcatctgtctcatcaccagaagaccgtcaaat
ccgtcttgtctctcgtttcgtcaatgaggcgcttctatgtcttgaagaaggtgttcttgc
ttcaccatctgatggagatatcgcctctgtcttcggtgttggattcccaccattctgggg
tggtccattccgtttcgttgatctctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATTCGGATTCCCAGTCGGAGCC 334 193 1791 Antisense
AGTCGGAGCCGCGACATTGGCTGAT 208 59 1806 Antisense
TGGACTCGATGTCGCCGAGCATGTC 78 549 1836 Antisense
CGAGCATGTCGCTCAATTCCTTGGA 402 251 1851 Antisense
AGACCGTCAAATCCGTCTTGTCTCT 381 71 2079 Antisense
TCTTGTCTCTCGTTTCGTCAATGAG 77 619 2094 Antisense
CGTCAATGAGGCGCTTCTATGTCTT 64 247 2109 Antisense
GTTCTTGCTTCACCATCTGATGGAG 200 445 2143 Antisense
CTGATGGAGATATCGCCTCTGTCTT 144 239 2159 Antisense
GTCTTCGGTGTTGGATTCCCACCAT 157 469 2179 Antisense
CCATTCCGTTTCGTTGATCTCTATG 80 271 2215 Antisense
Sequence Source Affymetrix Proprietary Database