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[190351_at]

Description Y75B8A.9 /REP_DB=WormBase Gene ID /WP=CE23021 /TR=Q9XW72 /GB=CAA22098.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster 6grp_high1_10_10 > 50      6grp_total > 40      4grp_total > 60      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 155.6
(1.9)
P 		132.1
(0.8)
P 		179.2
(3)
P 		52.9
(-3)
A 		126
B 101.9
(-1)
P 		143.5
(0.4)
P 		222.7
(3)
P 		39.5
(-3)
A 		183
C 149.1
(0.6)
P 		163.2
(1.1)
P 		216.2
(3)
P 		50.6
(-3)
A 		166
avr 135.5
(0.3) 		146.3
(0.7) 		206
(3) 		47.7
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 100.4
(-1.3)
P 		189.6
(2.3)
P 		183.7
(2.1)
P 		206.1
(3)
P 		65.1
(-2.7)
M 		58.4
(-3)
M 		148
B 147.9
(3)
P 		107.1
(0.2)
P 		127.4
(1.6)
P 		134.5
(2.1)
P 		90.4
(-0.9)
P 		59
(-3)
P 		89
C 206.2
(3)
P 		149.1
(-0.1)
P 		178.2
(1.5)
P 		181.5
(1.6)
P 		120.3
(-1.7)
P 		96.5
(-3)
P 		110
avr 151.5
(1.7) 		148.6
(1.5) 		163.1
(2.4) 		174
(3) 		91.9
(-1.8) 		71.3
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 56.6
(3)
P 		28.7
(-0.4)
P 		46.8
(1.8)
P 		7.8
(-3)
A 		49
B 32.5
(0.3)
P 		35.5
(0.8)
P 		51.6
(3)
P 		8.4
(-3)
A 		43
C 49.4
(0.7)
P 		46.9
(0.4)
P 		75.3
(3)
P 		8.5
(-3)
A 		67
avr 46.2
(1.6) 		37
(0.5) 		57.9
(3) 		8.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 18.5
(-2.5)
P 		67.4
(3)
P 		40
(-0.1)
P 		52.3
(1.3)
P 		19.6
(-2.4)
M 		14.2
(-3)
M 		53
B 51.5
(3)
P 		35.7
(-0.2)
P 		30.9
(-1.2)
P 		35.6
(-0.2)
P 		36.7
(-0)
P 		22
(-3)
P 		30
C 76.4
(3)
P 		45.5
(-1.2)
P 		45.4
(-1.2)
P 		36.5
(-2.4)
P 		38.9
(-2.1)
P 		32.3
(-3)
P 		44
avr 48.8
(2.8) 		49.5
(3) 		38.8
(0.6) 		41.5
(1.2) 		31.7
(-1) 		22.8
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7169
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.9 NCBI
Target Description Y75B8A.9 /REP_DB=WormBase Gene ID /WP=CE23021 /TR=Q9XW72 /GB=CAA22098.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027777 NCBI Caenorhabditis elegans Y75B8A.9a (Y75B8A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000020173 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12171374:12182888:-1 11/11 None
Y75B8A.9a ENSEMBL cdna:known chromosome:CEL140:III:12171237:12177118:-1 gene:Y75B8A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027778 1/11 Cross Hyb Matching Probes None
SNAP00000020072 8/11 Cross Hyb Matching Probes None
Y75B8A.9b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176647 2 1 NM_001027777 190351_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12171369-12177114(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y75B8A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22098 Hypothetical protein Y75B8A.9a [Caenorhabditis elegans] ref|NP_001022948.1| Y75B8A.9a [Caenorhabditis elegans] sp|Q7K755|GLT11_CAEEL Putative polypeptide N-acetylgalactosaminyltransferase 11 (Protein-UDP acetylgalactosaminyltransferase 11) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11) (pp-GaNTase 11) 0.0
blast CAE75097 Hypothetical protein CBG23019 [Caenorhabditis briggsae] 0.0
blast CAE47472 Hypothetical protein Y75B8A.9b [Caenorhabditis elegans] ref|NP_001022949.1| Y75B8A.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.9E-25
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.9E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022948.1 1 12-29
Y75B8A.9a 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:190351_AT
cagtccggctggcaagagtatggcttgatgaatatcttgaaaatttcttcgaagctcgtc
caaactaccgtacattcaccgactacggtgatcttacatcgagaatcagtctacgtagga
atttgcagtgtaaaccgttcaaatggtatttggaaaatatctatcctgaactattaccgg
ataacacaccaaatcagctgaataaccaaatacttgtcgctggaaagaaatatttgatta
aaatggcaaatggaacacattgtttgagcgctgaaaactcgcagggaaggattgcaaatg
ggaatcgggtggaaatgagaaaatgtaatcatatggagagaatgcaacaatggaaatact
catcgacgaatgagctacgaccgatgggctcatcccgaatgtgcctagattccttacgag
ggattagtgtcattttgtgtcataatcaaggagcacatcaaatgtggcaagtttcgaacg
ccggaaagctctacagtagatcagtgaataaatgtgcaactggatccaatgacgtcagtg
cgctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCCGGCTGGCAAGAGTATGGCT 335 207 1232 Antisense
ACTACCGTACATTCACCGACTACGG 133 101 1295 Antisense
CCGACTACGGTGATCTTACATCGAG 513 261 1310 Antisense
GAACTATTACCGGATAACACACCAA 533 349 1399 Antisense
GGAACACATTGTTTGAGCGCTGAAA 287 529 1483 Antisense
GACGAATGAGCTACGACCGATGGGC 341 379 1596 Antisense
GAATGTGCCTAGATTCCTTACGAGG 668 331 1628 Antisense
GAGGGATTAGTGTCATTTTGTGTCA 187 403 1649 Antisense
AATGTGGCAAGTTTCGAACGCCGGA 125 163 1692 Antisense
TCGAACGCCGGAAAGCTCTACAGTA 47 599 1705 Antisense
GATCCAATGACGTCAGTGCGCTGAG 136 415 1754 Antisense
Sequence Source Affymetrix Proprietary Database