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[190350_at] Coiled coil protein

Description ZK632.2 /REP_DB=WormBase Gene ID /WP=CE00419 /TR=SW:P34648 /GB=CAA80179.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 15      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 400.6
(0.3)
P 		321.1
(-2)
P 		288.1
(-3)
P 		494.2
(3)
P 		206
B 429.3
(3)
P 		314.7
(-3)
P 		327.4
(-2.3)
P 		401.2
(1.5)
P 		115
C 461.8
(3)
P 		251.4
(-3)
P 		360.6
(0.1)
P 		333.2
(-0.7)
P 		210
avr 430.6
(3) 		295.7
(-3) 		325.4
(-1.7) 		409.5
(2.1) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 401
(0.1)
P 		397.2
(-0.2)
P 		372.3
(-1.7)
P 		418.2
(1.1)
P 		351.7
(-3)
P 		448.2
(3)
P 		97
B 402.5
(1.2)
P 		356.1
(-0.9)
P 		397.3
(1)
P 		311.1
(-3)
P 		316.1
(-2.8)
P 		441
(3)
P 		130
C 282.5
(-2.4)
P 		363.9
(-0.7)
P 		422.6
(0.5)
P 		431.6
(0.7)
P 		254.5
(-3)
P 		543.2
(3)
P 		289
avr 362
(-1.1) 		372.4
(-0.7) 		397.4
(0.2) 		387
(-0.2) 		307.4
(-3) 		477.5
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 145.9
(3)
P 		69.7
(-3)
P 		75.3
(-2.6)
P 		72.3
(-2.8)
P 		76
B 136.9
(3)
P 		77.7
(-2.8)
P 		75.9
(-3)
P 		85.5
(-2.1)
P 		61
C 152.9
(3)
P 		72.3
(-2)
P 		125.7
(1.3)
P 		56.2
(-3)
P 		97
avr 145.2
(3) 		73.2
(-2.8) 		92.3
(-1.3) 		71.3
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 73.9
(-3)
P 		141.3
(3)
P 		81.1
(-2.4)
P 		106.1
(-0.1)
P 		106.1
(-0.1)
P 		109.1
(0.1)
P 		67
B 140
(1.2)
P 		118.5
(-0.4)
P 		96.5
(-2)
P 		82.4
(-3)
P 		128.4
(0.4)
P 		164.4
(3)
P 		82
C 104.7
(-1.7)
P 		111
(-1.3)
P 		107.6
(-1.5)
P 		86.8
(-2.7)
P 		82.3
(-3)
P 		181.9
(3)
P 		100
avr 106.2
(-1.6) 		123.6
(0.2) 		95.1
(-2.7) 		91.8
(-3) 		105.6
(-1.6) 		151.8
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7608
Sequence Type Exemplar sequence
Representative Public ID ZK632.2 NCBI
Target Description ZK632.2 /REP_DB=WormBase Gene ID /WP=CE00419 /TR=SW:P34648 /GB=CAA80179.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066771 NCBI Caenorhabditis elegans ZK632.2 (ZK632.2) mRNA, complete cds. 11/11 None
SNAP00000031471 ENSEMBL cdna:SNAP chromosome:CEL140:III:9799005:9802179:1 11/11 None
GENEFINDER00000031486 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9799005:9802179:1 11/11 None
ZK632.2 ENSEMBL cdna:known chromosome:CEL140:III:9799001:9802192:1 gene:ZK632.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9799000-9802175(+) 100.0 100.0
Public Domain and Genome References
Gene Title Coiled coil protein
Ensembl ZK632.2
Entrez Gene 176386 Entrez gene
SwissProt P34648 EMBL-EBI
WormBase CE00419 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249538_AT forkhead-associated domain-containing protein / FHA domain-containing protein at
CANINE:1587292_AT similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein cfa
CANINE_2:CFA.15023.1.A1_AT similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein cfa
CANINE_2:CFA.20995.1.S1_S_AT similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein cfa
CANINE_2:CFAAFFX.8716.1.S1_AT similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein cfa
CANINE_2:CFAAFFX.8717.1.S1_S_AT similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein cfa
DROSOPHILA_2:1633755_AT dm
DROSGENOME1:153572_AT dm
CHICKEN:GGA.15925.1.S1_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein gga
CHICKEN:GGA.16478.1.S1_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein gga
CHICKEN:GGAAFFX.20768.1.S1_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein gga
CHICKEN:GGAAFFX.20768.1.S1_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein gga
CHICKEN:GGAAFFX.6315.1.S1_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein gga
HG-U133_PLUS_2:218682_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U133A:218682_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U133A_2:218682_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HU35KSUBB:RC_N26833_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
U133_X3P:G8922556_3P_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
U133_X3P:HS2.435329.1.A1_3P_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U133_PLUS_2:1558201_S_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U95B:51283_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U95E:85972_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U133_PLUS_2:242030_AT Solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U133B:242030_AT Solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
HG-U95D:83249_AT Solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
U133_X3P:HS.175377.0.A1_3P_AT Solute carrier family 4 (anion exchanger), member 1, adaptor protein hs
MOUSE430_2:1437758_A_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein mm
MOE430A:1437758_A_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein mm
MOUSE430A_2:1437758_A_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein mm
MU11KSUBA:AF035526_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein mm
MG-U74AV2:93396_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein mm
RG-U34C:RC_AI170735_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted) rn
RAE230A:1373953_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted) rn
RAT230_2:1373953_AT solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3725 double-stranded RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80179 Hypothetical protein ZK632.2 [Caenorhabditis elegans] ref|NP_499172.1| ZK632.2 [Caenorhabditis elegans] sp|P34648|YOT2_CAEEL Hypothetical protein ZK632.2 in chromosome III 0.0
blast CAE65128 Hypothetical protein CBG09993 [Caenorhabditis briggsae] 0.0
blast XP_787417 PREDICTED: similar to solute carrier family 4 (anion exchanger), member 1, adaptor protein, partial [Strongylocentrotus purpuratus] 5.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 9.8E-13
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.7E-10
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 9.8E-13
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.7E-10
Sequence
Target Sequence 
>C. ELEGANS:190350_AT
gaaactactgctgccaatgatcgacaagcattccttaaaaagttgatgggtgttcgagca
agaaaagaaattgatcaaacaccttcacaaggaccaggaccgtcgacttcagctactctt
ccagctacagtagccccaacctcaacaaaagctgtggaagttgaacatgagaagaagatg
actccattaaaagttgagaaagaaattgctgcatcattggattcatctgaaataaagaat
tctttaccggctgtagatgaaccaagctcggtaaaagacgaagtttctgaagaaactcca
cagaaagaagcattcggcagcaaagttcagaagagagttgcacaatgggaagaggagctt
gaagctgaaaaagaagaactcgcgaaaaagcaaaagcttgaagcggaagaagaagctaag
aaaaaggttcaaagagtccgacggcgtgatattgaaaagaagatcgctggatcagaagat
tacggtgcaggtgttgaggatcgagatgagaaatactcaacatggatgccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTACTGCTGCCAATGATCGAC 1 357 1549 Antisense
TCACAAGGACCAGGACCGTCGACTT 342 627 1633 Antisense
TCAGCTACTCTTCCAGCTACAGTAG 384 623 1657 Antisense
TAGCCCCAACCTCAACAAAAGCTGT 554 645 1679 Antisense
ATTGCTGCATCATTGGATTCATCTG 147 7 1753 Antisense
AAAGAATTCTTTACCGGCTGTAGAT 633 123 1782 Antisense
GGCTGTAGATGAACCAAGCTCGGTA 146 539 1797 Antisense
GAAGCATTCGGCAGCAAAGTTCAGA 494 341 1855 Antisense
AGGTTCAAAGAGTCCGACGGCGTGA 663 55 1973 Antisense
GAAGATTACGGTGCAGGTGTTGAGG 428 335 2023 Antisense
GAAATACTCAACATGGATGCCACCA 306 363 2058 Antisense
Sequence Source Affymetrix Proprietary Database