[Home] | [Total List]

[190347_s_at]

Description F55C7.7B /REP_DB=WormBase Gene ID /WP=CE19465 /GEN=unc-73 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=guanine nucleotide exchange factor
Cluster 6grp_total > 26      4grp_total > 46      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 159.1
(3)
P 		79.6
(-1.8)
A 		58.8
(-3)
A 		94.6
(-0.9)
A 		100
B 229.5
(3)
P 		101.3
(-0.6)
A 		14.2
(-3)
A 		99.5
(-0.6)
A 		215
C 190.6
(3)
P 		157
(1.2)
A 		79.6
(-2.9)
A 		77.8
(-3)
A 		113
avr 193.1
(3) 		112.6
(-0.4) 		50.9
(-3) 		90.6
(-1.3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 109.4
(1.8)
A 		124.2
(2.6)
P 		22.7
(-3)
A 		80.7
(0.2)
A 		62.2
(-0.8)
A 		130.6
(3)
A 		108
B 40.9
(-3)
A 		100
(3)
A 		41
(-3)
A 		59.3
(-1.1)
A 		65.1
(-0.5)
A 		50.8
(-2)
P 		59
C 141.7
(3)
P 		77.4
(0.1)
A 		53
(-1)
A 		84.5
(0.4)
A 		58.2
(-0.8)
P 		8.9
(-3)
A 		133
avr 97.3
(2.7) 		100.5
(3) 		38.9
(-3) 		74.8
(0.5) 		61.8
(-0.8) 		63.4
(-0.6) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 57.9
(3)
P 		17.3
(-2.5)
A 		15.4
(-2.8)
A 		13.8
(-3)
A 		44
B 73.2
(3)
P 		25
(-1.1)
A 		3.3
(-3)
A 		21.2
(-1.5)
A 		70
C 63.1
(3)
P 		45.1
(0.8)
A 		27.8
(-1.2)
A 		13.1
(-3)
A 		50
avr 64.7
(3) 		29.1
(-1.3) 		15.5
(-3) 		16
(-2.9) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 20.2
(-0.7)
A 		44.2
(3)
P 		4.9
(-3)
A 		20.5
(-0.6)
A 		18.8
(-0.9)
A 		31.8
(1.1)
A 		39
B 14.2
(-1.9)
A 		33.3
(3)
A 		10
(-3)
A 		15.7
(-1.5)
A 		26.4
(1.2)
A 		19
(-0.7)
P 		23
C 52.5
(3)
P 		23.6
(-0.5)
A 		13.5
(-1.7)
A 		17
(-1.3)
A 		18.8
(-1.1)
P 		3
(-3)
A 		50
avr 29
(1.8) 		33.7
(3) 		9.5
(-3) 		17.7
(-1) 		21.3
(-0.1) 		17.9
(-0.9) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190347_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.167
Sequence Type Exemplar sequence
Representative Public ID F55C7.7B NCBI
Target Description F55C7.7B /REP_DB=WormBase Gene ID /WP=CE19465 /GEN=unc-73 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=guanine nucleotide exchange factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026325(11), NM_001026330(11), NM_001026326(11), AF048835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026325 NCBI Caenorhabditis elegans UNCoordinated family member (unc-73) (unc-73) mRNA, complete cds. 11/11 None
NM_001026330 NCBI Caenorhabditis elegans UNCoordinated family member (unc-73) (unc-73) mRNA, complete cds. 11/11 None
NM_001026326 NCBI Caenorhabditis elegans UNCoordinated family member (unc-73) (unc-73) mRNA, complete cds. 11/11 None
AF048835 NCBI Caenorhabditis elegans guanine nucleotide exchange factor UNC-73B (unc-73) mRNA, complete cds. 11/11 None
F55C7.7a ENSEMBL cdna:known chromosome:CEL140:I:3999350:4031628:-1 gene:F55C7.7 11/11 A 
F55C7.7f ENSEMBL cdna:known chromosome:CEL140:I:4001631:4031628:-1 gene:F55C7.7 11/11 A 
F55C7.7b ENSEMBL cdna:known chromosome:CEL140:I:4015764:4031628:-1 gene:F55C7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171988 6 3 NM_001026325 172976_s_at (11), 186050_s_at (11), 190347_s_at (11), 193621_s_at (11)
NM_001026326 190347_s_at (11)
NM_001026327 172976_s_at (11), 186050_s_at (11), 193621_s_at (11)
NM_001026328 186050_s_at (11)
NM_001026329 186050_s_at (11)
NM_001026330 186050_s_at (9), 190347_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4015763-4029229(-) 99.57 99.57
Public Domain and Genome References
Ensembl F55C7.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71108 Uncoordinated protein 73, isoform a [Caenorhabditis elegans] ref|NP_001021496.1| UNCoordinated family member (unc-73) [Caenorhabditis elegans] gb|AAC12931.1| guanine nucleotide exchange factor UNC-73A [Caenorhabditis elegans] 0.0
blast AAT68892 Uncoordinated protein 73, isoform f [Caenorhabditis elegans] ref|NP_001021501.1| UNCoordinated family member (unc-73) [Caenorhabditis elegans] 0.0
blast AAC71109 Uncoordinated protein 73, isoform b [Caenorhabditis elegans] ref|NP_001021497.1| UNCoordinated family member (unc-73) [Caenorhabditis elegans] gb|AAC12932.1| guanine nucleotide exchange factor UNC-73B [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.7E-9
Pfam IPR000219 EMBL-EBI DH domain 2.4E-18
Pfam IPR000219 EMBL-EBI DH domain 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:190347_S_AT
aagccccttccactaagcgaagtgtcaattgtggagcacgtcgaaggcgacacttgccga
ttcggtcttcgtgttggaactgtgtcgtcgaacgataatcgcattgatttgaaggccaac
aatcatcatacaaaagtgaaatgggttcagaaaatccgtgatctaacagctggaatgttg
ccattgggtcttggagtatcggaggcttactcagttggaacactatcgacagcccgtagt
gtctcagtgcgatcaggtgcatccacgtcgtctggtggtgagaatcgacaatcacaggat
gtcgagtcacttttacgccatcgatacagtgttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCCCTTCCACTAAGCGAAGTGT 470 147 4375 Antisense
GAGCACGTCGAAGGCGACACTTGCC 188 389 4408 Antisense
ACACTTGCCGATTCGGTCTTCGTGT 265 111 4424 Antisense
GTCTTCGTGTTGGAACTGTGTCGTC 524 467 4439 Antisense
TGGGTCTTGGAGTATCGGAGGCTTA 362 553 4559 Antisense
GGAGGCTTACTCAGTTGGAACACTA 362 515 4575 Antisense
TATCGACAGCCCGTAGTGTCTCAGT 391 657 4598 Antisense
GTCTCAGTGCGATCAGGTGCATCCA 383 453 4615 Antisense
TGCATCCACGTCGTCTGGTGGTGAG 362 577 4632 Antisense
ATGTCGAGTCACTTTTACGCCATCG 515 47 4673 Antisense
TTACGCCATCGATACAGTGTTCACA 201 683 4687 Antisense
Sequence Source Affymetrix Proprietary Database