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[190346_at]

Description F10G8.9 /REP_DB=WormBase Gene ID /WP=CE09344 /TR=Q93458 /GB=CAB02284.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-ketoacyl synthase
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 65      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 115.2
(-1.4)
P 		65.1
(-3)
A 		86.6
(-2.3)
P 		247.5
(3)
P 		182
B 116.1
(-1.1)
P 		71.7
(-3)
P 		108.5
(-1.4)
P 		211
(3)
P 		139
C 137.3
(-2)
P 		117.2
(-3)
P 		149.4
(-1.4)
P 		236.2
(3)
P 		119
avr 122.9
(-1.4) 		84.7
(-3) 		114.8
(-1.8) 		231.6
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 111.3
(-3)
P 		133.7
(-2.1)
P 		203.4
(0.9)
P 		157.1
(-1.1)
P 		128.4
(-2.3)
P 		253.8
(3)
P 		143
B 146
(-3)
P 		148.5
(-2.8)
P 		178.8
(-0.8)
P 		171.5
(-1.3)
P 		148.1
(-2.9)
P 		237.2
(3)
P 		91
C 126.2
(-3)
P 		163.3
(-1)
P 		180.3
(-0.1)
P 		174.7
(-0.4)
P 		161.1
(-1.1)
P 		239.3
(3)
P 		113
avr 127.8
(-3) 		148.5
(-1.9) 		187.5
(0.1) 		167.8
(-0.9) 		145.9
(-2.1) 		243.4
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 41.9
(3)
P 		14.1
(-3)
A 		22.6
(-1.2)
P 		36.2
(1.8)
P 		28
B 37
(1.2)
P 		17.7
(-3)
P 		25.1
(-1.4)
P 		45
(3)
P 		27
C 45.5
(0.8)
P 		33.7
(-3)
P 		52.1
(3)
P 		39.8
(-1)
P 		18
avr 41.5
(3) 		21.8
(-3) 		33.3
(0.5) 		40.3
(2.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 20.5
(-3)
P 		47.5
(0.9)
P 		44.3
(0.5)
P 		39.9
(-0.2)
P 		38.8
(-0.3)
P 		61.8
(3)
P 		41
B 50.8
(-2)
P 		49.4
(-2.2)
P 		43.4
(-3)
P 		45.4
(-2.7)
P 		60.2
(-0.8)
P 		88.5
(3)
P 		45
C 46.8
(-1.4)
P 		49.8
(-1)
P 		45.9
(-1.6)
P 		35.1
(-3)
P 		52.1
(-0.7)
P 		80.1
(3)
P 		45
avr 39.4
(-3) 		48.9
(-1.5) 		44.5
(-2.2) 		40.1
(-2.9) 		50.4
(-1.2) 		76.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.987
Sequence Type Exemplar sequence
Representative Public ID F10G8.9 NCBI
Target Description F10G8.9 /REP_DB=WormBase Gene ID /WP=CE09344 /TR=Q93458 /GB=CAB02284.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-ketoacyl synthase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025927(11), NM_001025926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025927 NCBI Caenorhabditis elegans F10G8.9b (F10G8.9) mRNA, complete cds. 11/11 None
NM_001025926 NCBI Caenorhabditis elegans F10G8.9a (F10G8.9) mRNA, complete cds. 11/11 None
SNAP00000036097 ENSEMBL cdna:SNAP chromosome:CEL140:I:10056231:10058806:1 11/11 None
F10G8.9b ENSEMBL cdna:known chromosome:CEL140:I:10056207:10058823:1 gene:F10G8.9 11/11 None
F10G8.9a ENSEMBL cdna:known chromosome:CEL140:I:10057175:10058806:1 gene:F10G8.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036105 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10056137-10058737(+) 100.0 100.0
Public Domain and Genome References
Ensembl F10G8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10778 Hypothetical protein F10G8.9b [Caenorhabditis elegans] ref|NP_001021098.1| F10G8.9b [Caenorhabditis elegans] 0.0
blast CAE60220 Hypothetical protein CBG03789 [Caenorhabditis briggsae] 0.0
blast CAB02284 Hypothetical protein F10G8.9a [Caenorhabditis elegans] ref|NP_001021097.1| F10G8.9a [Caenorhabditis elegans] 1.0E-146
blast CAH10778 Hypothetical protein F10G8.9b [Caenorhabditis elegans] ref|NP_001021098.1| F10G8.9b [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 3.9E-61
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.3E-49
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 3.9E-61
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 4.2E-30
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 3.9E-61
Pfam IPR000794 EMBL-EBI Beta-ketoacyl synthase 1.5E-42
Sequence
Target Sequence 
>C. ELEGANS:190346_AT
gaacgactagaagatgcacaggcacgtggagcacagattttagctgaagttgttggatat
ggaatatcatctgattgttatcatatttctacacctgatccatctgcaattggtgcagtt
ctttcaatgaacagagcgataggaaatgcacatttggagccgaaagatattggatatgta
aatgctcatgcaacatcaacaccaaatggggatagtgtagaagcagaagctgtacgacaa
gtatttccagaacaaaatattgcagtgagcagtgtcaaaggacatattggacatcttctt
ggtgcagctggatcagttgaagcaattgcaacgatttttgcaatgaatgatgatgtttta
ccagcgaatcgaaatttagaagaaactgatgaaggaaatggattgaatcttctccgcgaa
aatcaaaaatggtctgatgtttccggaaataaatcgcgaatctcaatttgtaattcattt
ggattcggtgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGACTAGAAGATGCACAGGCAC 649 347 700 Antisense
GCACAGGCACGTGGAGCACAGATTT 347 317 715 Antisense
TCATATTTCTACACCTGATCCATCT 501 619 780 Antisense
GCAATTGGTGCAGTTCTTTCAATGA 426 323 805 Antisense
GGAAATGCACATTTGGAGCCGAAAG 361 527 841 Antisense
GACATATTGGACATCTTCTTGGTGC 19 371 980 Antisense
TCTTCTTGGTGCAGCTGGATCAGTT 376 617 993 Antisense
GATGATGTTTTACCAGCGAATCGAA 520 409 1048 Antisense
GAAATGGATTGAATCTTCTCCGCGA 552 361 1094 Antisense
AAAATGGTCTGATGTTTCCGGAAAT 167 115 1125 Antisense
GTAATTCATTTGGATTCGGTGCCAC 430 463 1169 Antisense
Sequence Source Affymetrix Proprietary Database