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[190344_at] Lectin C-type domain

Description F26D10.12 /REP_DB=WormBase Gene ID /WP=CE19812 /TR=Q9XVT9 /GB=CAB02321.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 68      4grp_total > 22      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 81
(3)
P 		68.4
(1.7)
A 		58
(0.6)
A 		24.2
(-3)
A 		57
B 77.7
(2.9)
A 		79.2
(3)
A 		10.4
(-3)
A 		67.7
(2)
A 		69
C 86.1
(-0.1)
A 		27.6
(-3)
A 		64.8
(-1.2)
A 		149.5
(3)
A 		122
avr 81.6
(3) 		58.4
(-0.7) 		44.4
(-3) 		80.5
(2.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 164.4
(3)
P 		38.7
(-3)
A 		56.8
(-2.1)
A 		63.7
(-1.8)
A 		96.2
(-0.3)
P 		108.7
(0.3)
P 		126
B 87
(-2.4)
P 		63
(-2.9)
P 		58.2
(-3)
A 		68.4
(-2.8)
A 		89.9
(-2.3)
P 		327.8
(3)
P 		270
C 74.6
(-2.3)
P 		82.7
(-2.1)
A 		49.5
(-3)
A 		88.7
(-1.9)
A 		50.1
(-3)
A 		272.2
(3)
P 		223
avr 108.7
(-1.2) 		61.5
(-2.8) 		54.8
(-3) 		73.6
(-2.4) 		78.7
(-2.2) 		236.2
(3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29.5
(3)
P 		14.8
(-0.4)
A 		15.2
(-0.3)
A 		3.5
(-3)
A 		26
B 24.8
(3)
A 		19.6
(1.6)
A 		2.4
(-3)
A 		14.4
(0.2)
A 		22
C 28.5
(3)
A 		7.9
(-3)
A 		22.6
(1.3)
A 		25.2
(2)
A 		21
avr 27.6
(3) 		14.1
(-2.7) 		13.4
(-3) 		14.4
(-2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 30.3
(3)
P 		13.8
(-2.5)
A 		12.4
(-3)
A 		16.2
(-1.7)
A 		29
(2.6)
P 		26.5
(1.7)
P 		18
B 30.3
(-2.1)
P 		21
(-2.6)
P 		14.1
(-3)
A 		18.1
(-2.8)
A 		36.5
(-1.8)
P 		122.2
(3)
P 		108
C 27.6
(-1.9)
P 		25.2
(-2)
A 		12.6
(-3)
A 		17.8
(-2.6)
A 		16.2
(-2.7)
A 		91.1
(3)
P 		79
avr 29.4
(-1.5) 		20
(-2.4) 		13
(-3) 		17.4
(-2.6) 		27.2
(-1.7) 		79.9
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9587
Sequence Type Exemplar sequence
Representative Public ID F26D10.12 NCBI
Target Description F26D10.12 /REP_DB=WormBase Gene ID /WP=CE19812 /TR=Q9XVT9 /GB=CAB02321.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070666 NCBI Caenorhabditis elegans F26D10.12 (F26D10.12) mRNA, complete cds. 11/11 None
SNAP00000006841 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17276921:17277635:1 11/11 None
GENEFINDER00000006850 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17276921:17277635:1 11/11 None
F26D10.12 ENSEMBL cdna:known chromosome:CEL140:IV:17276921:17277641:1 gene:F26D10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17276926-17277641(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F26D10.12
Entrez Gene 178506 Entrez gene
SwissProt Q9XVT9 EMBL-EBI
WormBase CE19812 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02321 Hypothetical protein F26D10.12 [Caenorhabditis elegans] ref|NP_503067.1| F26D10.12 [Caenorhabditis elegans] 2.0E-78
blast CAE57487 Hypothetical protein CBG00456 [Caenorhabditis briggsae] 2.0E-45
blast CAE65762 Hypothetical protein CBG10851 [Caenorhabditis briggsae] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503067.1 1 4-26
F26D10.12 1 4-26
SNAP00000006841 1 4-26
GENEFINDER00000006850 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:190344_AT
aaattattgattctctccgtttgccttgttggaatctttggaaatcgaatttttggagtg
aagacatgcccgaaaggttggcttcagtttgaggacaattgctacattcgccagcccgat
ttttccagcttccgtgaatcagtgaaaaattgtgagaaaaggggcgcaaaactattccat
ttcgatgattccttcgaattcgaggccgtcaggaatttgttcccggattattatttcact
tggatgcaagccgaagttgaggaggaattagaatggctgtacgagccctacgaggaaaaa
atgaacggaaaaaacagcgctgccaagtgtatcgccttctactcgtcaccaaccaaaagc
tacaactacttctatccttgcacatcacacttccactcaatctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTATTGATTCTCTCCGTTTGCC 482 115 31 Antisense
ATTTTTCCAGCTTCCGTGAATCAGT 464 15 149 Antisense
GGGCGCAAAACTATTCCATTTCGAT 300 493 192 Antisense
GATTCCTTCGAATTCGAGGCCGTCA 326 431 217 Antisense
GAGGCCGTCAGGAATTTGTTCCCGG 621 405 232 Antisense
GTTCCCGGATTATTATTTCACTTGG 173 441 249 Antisense
AATGGCTGTACGAGCCCTACGAGGA 334 157 302 Antisense
AACAGCGCTGCCAAGTGTATCGCCT 333 137 343 Antisense
TCTACTCGTCACCAACCAAAAGCTA 81 615 368 Antisense
TACAACTACTTCTATCCTTGCACAT 225 643 391 Antisense
ACATCACACTTCCACTCAATCTGTG 176 105 412 Antisense
Sequence Source Affymetrix Proprietary Database