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[190343_at]

Description Y37E11B.1 /REP_DB=WormBase Gene ID /WP=CE19611 /TR=Q9TYN5 /GB=AAD12821.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 21      4grp_high_8_8 > 13      6grp_total > 33      4grp_total > 11      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 42.8
(-2.8)
P 		50.4
(-2.4)
M 		37.6
(-3)
P 		168.4
(3)
P 		131
B 60.5
(-1.7)
P 		61
(-1.6)
P 		39.9
(-3)
A 		133.3
(3)
P 		93
C 68.9
(-1.3)
P 		53.3
(-2.1)
P 		34.3
(-3)
P 		159
(3)
P 		125
avr 57.4
(-2) 		54.9
(-2.1) 		37.3
(-3) 		153.6
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 63.7
(0.6)
M 		88.9
(3)
P 		82.8
(2.4)
P 		70.8
(1.3)
P 		46.5
(-1.1)
P 		26.8
(-3)
A 		62
B 68.9
(0.7)
P 		54.8
(-0.3)
P 		103.3
(3)
P 		15.4
(-3)
A 		56.6
(-0.2)
P 		37.6
(-1.5)
P 		88
C 84.9
(3)
P 		74.4
(1.9)
P 		27
(-3)
A 		67.6
(1.2)
M 		67.9
(1.2)
P 		48.5
(-0.8)
P 		58
avr 72.5
(3) 		72.7
(3) 		71
(2.7) 		51.3
(-0.7) 		57
(0.3) 		37.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.6
(-0.7)
P 		11
(-2.5)
M 		9.8
(-3)
P 		24.7
(3)
P 		15
B 19.3
(0.1)
P 		15.1
(-1.2)
P 		9.3
(-3)
A 		28.4
(3)
P 		19
C 22.8
(1.4)
P 		15.3
(-1.7)
P 		12
(-3)
P 		26.8
(3)
P 		15
avr 19.2
(0.3) 		13.8
(-1.7) 		10.4
(-3) 		26.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 11.7
(-1.8)
M 		31.6
(3)
P 		18
(-0.3)
P 		18
(-0.3)
P 		14
(-1.2)
P 		6.5
(-3)
A 		25
B 24
(2.7)
P 		18.2
(1)
P 		25.1
(3)
P 		4.1
(-3)
A 		23
(2.4)
P 		14
(-0.2)
P 		21
C 31.5
(3)
P 		22.7
(0.9)
P 		6.9
(-3)
A 		13.6
(-1.4)
M 		22
(0.7)
P 		16.2
(-0.7)
P 		25
avr 22.4
(2.1) 		24.2
(3) 		16.7
(-0.7) 		11.9
(-3) 		19.7
(0.8) 		12.2
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10647
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.1 NCBI
Target Description Y37E11B.1 /REP_DB=WormBase Gene ID /WP=CE19611 /TR=Q9TYN5 /GB=AAD12821.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028269(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028269 NCBI Caenorhabditis elegans Y37E11B.1a (Y37E11B.1) mRNA, complete cds. 10/11 None
GENEFINDER00000044702 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3579993:3580612:1 9/11 None
Y37E11B.1a ENSEMBL cdna:known chromosome:CEL140:IV:3579618:3580949:1 gene:Y37E11B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028270 8/11 Cross Hyb Matching Probes None
SNAP00000044691 1/11 Cross Hyb Matching Probes None
Y37E11B.1b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177118 2 1 NM_001028269 190343_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3579998-3580955(+) 94.67 100.0
Public Domain and Genome References
Ensembl Y37E11B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12821 Hypothetical protein Y37E11B.1a [Caenorhabditis elegans] ref|NP_001023440.1| Y37E11B.1a [Caenorhabditis elegans] 1.0E-103
blast AAP82633 Hypothetical protein Y37E11B.1b [Caenorhabditis elegans] ref|NP_001023441.1| Y37E11B.1b [Caenorhabditis elegans] 7.0E-52
blast AAP82633 Hypothetical protein Y37E11B.1b [Caenorhabditis elegans] ref|NP_001023441.1| Y37E11B.1b [Caenorhabditis elegans] 2.0E-35
blast CAE63775 Hypothetical protein CBG08313 [Caenorhabditis briggsae] 4.0E-34
blast CAE63775 Hypothetical protein CBG08313 [Caenorhabditis briggsae] 2.0E-33
blast AAD12821 Hypothetical protein Y37E11B.1a [Caenorhabditis elegans] ref|NP_001023440.1| Y37E11B.1a [Caenorhabditis elegans] 9.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.1E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:190343_AT
gcacgagaggattcatgacgaggctgaacgaaaactcgaatgttccacgtgccaaaagcg
atttcataacgccgaattgctccgaaaacaccaaattgttcatgatattccaaaaaaatc
gataatttgtgaggtttgcggcaagaaatacagctcgaaatcggcgttagcaaaacacaa
aaggacgcatgagacggataaaaggtgcaaaataaaattaatttttgggagttcgcaaaa
aaaaactcaaaaactgtactttctgcagaaattatcatttttagatgccgattttttttc
cattttggagcgaaatttgttaatattcggctactttgcaatatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGAGAGGATTCATGACGAGGCT 93 315 99 Antisense
GAAAACTCGAATGTTCCACGTGCCA 308 353 128 Antisense
GTTCCACGTGCCAAAAGCGATTTCA 318 441 140 Antisense
GATTTCATAACGCCGAATTGCTCCG 253 427 158 Antisense
GCCGAATTGCTCCGAAAACACCAAA 190 285 169 Antisense
ATCGATAATTTGTGAGGTTTGCGGC 619 33 216 Antisense
GTTTGCGGCAAGAAATACAGCTCGA 195 451 232 Antisense
TACAGCTCGAAATCGGCGTTAGCAA 493 641 247 Antisense
AAACTCAAAAACTGTACTTTCTGCA 106 127 341 Antisense
ATTTGTTAATATTCGGCTACTTTGC 93 15 413 Antisense
ATTCGGCTACTTTGCAATATTTTTT 356 9 423 Antisense
Sequence Source Affymetrix Proprietary Database