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[190340_s_at] Hint module

Description ZK678.5 /REP_DB=WormBase Gene ID /WP=CE24735 /GEN=wrt-4 /TR=Q94410 /GB=CAB01902.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Hint module
Cluster 6grp_total > 82      4grp_total > 56      6grp_cgc > 64      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1452
1 2 3 4 range
A 6.8
(-3)
A 		1258.5
(2.3)
P 		1423.2
(3)
P 		31.7
(-2.9)
A 		1416
B 8.7
(-3)
A 		1192.3
(1.9)
P 		1458.8
(3)
P 		49.7
(-2.8)
A 		1450
C 7.2
(-3)
A 		1085
(1.9)
P 		1315.4
(3)
P 		55.9
(-2.8)
A 		1308
avr 7.6
(-3) 		1178.6
(2) 		1399.1
(3) 		45.8
(-2.8) 		1392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 79.6
(-3)
A 		764.8
(3)
P 		310.3
(-1)
P 		426.2
(0)
P 		677.9
(2.2)
P 		118.1
(-2.7)
P 		685
B 83.9
(-3)
A 		704.1
(3)
P 		215
(-1.7)
P 		493.8
(1)
P 		615.3
(2.1)
P 		123.1
(-2.6)
A 		620
C 84.9
(-3)
A 		756
(3)
P 		387.1
(-0.3)
P 		411.7
(-0.1)
P 		628.2
(1.9)
P 		137.9
(-2.5)
P 		671
avr 82.8
(-3) 		741.6
(3) 		304.1
(-1) 		443.9
(0.3) 		640.5
(2.1) 		126.4
(-2.6) 		659
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 456
1 2 3 4 range
A 2.5
(-3)
A 		273.2
(1.4)
P 		372
(3)
P 		4.6
(-3)
A 		370
B 2.8
(-3)
A 		294.5
(2.2)
P 		338
(3)
P 		10.6
(-2.9)
A 		335
C 2.4
(-3)
A 		312
(1.1)
P 		458.4
(3)
P 		9.4
(-2.9)
A 		456
avr 2.6
(-3) 		293.2
(1.5) 		389.5
(3) 		8.2
(-2.9) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 14.7
(-3)
A 		272
(3)
P 		67.6
(-1.8)
P 		108.1
(-0.8)
P 		204.6
(1.4)
P 		28.7
(-2.7)
P 		257
B 29.2
(-3)
A 		234.4
(2.6)
P 		52.2
(-2.4)
P 		130.8
(-0.2)
P 		250
(3)
P 		45.9
(-2.5)
A 		221
C 31.5
(-3)
A 		230.7
(3)
P 		98.5
(-1)
P 		82.8
(-1.5)
P 		203.3
(2.2)
P 		46.2
(-2.6)
P 		199
avr 25.1
(-3) 		245.7
(3) 		72.8
(-1.7) 		107.2
(-0.8) 		219.3
(2.3) 		40.3
(-2.6) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190340_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17768
Sequence Type Exemplar sequence
Representative Public ID ZK678.5 NCBI
Target Description ZK678.5 /REP_DB=WormBase Gene ID /WP=CE24735 /GEN=wrt-4 /TR=Q94410 /GB=CAB01902.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Hint module
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078192 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-4) (wrt-4) mRNA, complete cds. 11/11 None
SNAP00000038619 ENSEMBL cdna:SNAP chromosome:CEL140:X:15752386:15757182:-1 11/11 None
GENEFINDER00000038622 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15752386:15757182:-1 11/11 None
ZK678.5.2 ENSEMBL cdna:known chromosome:CEL140:X:15752176:15757187:-1 gene:ZK678.5 11/11 None
ZK678.5.1 ENSEMBL cdna:known chromosome:CEL140:X:15752176:15757188:-1 gene:ZK678.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15752385-15757182(-) 99.94 100.0
Public Domain and Genome References
Gene Title Hint module
Gene Symbol wrt-4
Ensembl ZK678.5
Entrez Gene 181664 Entrez gene
SwissProt Q94129 EMBL-EBI
WormBase CE24735 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7154 cell communication inferred from electronic annotation QuickGO AmiGO
7275 development inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01902 Hypothetical protein ZK678.5 [Caenorhabditis elegans] ref|NP_510593.1| WaRThog (hedgehog-like family) family member (wrt-4) [Caenorhabditis elegans] sp|Q94129|WRT4_CAEEL Warthog protein 4 precursor (M75 protein) [Contains: Warthog protein 4 N-product; Warthog protein 4 C-product] 1.0E-147
blast T27975 hypothetical protein ZK678.5 - Caenorhabditis elegans 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 5.7E-113
Sequence
Target Sequence 
>C. ELEGANS:190340_S_AT
ggctctcgacaagaatggctctcaagtaacatttatcccggttcaatactggcttcatcg
tgatccaaaacaagttgcagattttgtagaattcacacttgacaacggagagacattctc
attgaccgagaagcatttggtctttgtaactcaatgttctgtgccctattctgaggatga
gaatataaatgcaaacccagtaccagctgagagagtaaacattggagactgtttctacat
tgcacaccgcaagaagtcccaaatgtatcaacgcgtaaaagttcttgacatcaatattgt
gcaaaaaactggaatctactcgccaatgacgtcacgtggccatctcctggtagaccgtat
tcatgcatcttgccactccgaaaccgacaattacagccttcaaaacactttcttcactaa
tgttctccgatggaagtcacaaatccgcaactacttctggactgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTCGACAAGAATGGCTCTCAA 323 537 1131 Antisense
CATTTATCCCGGTTCAATACTGGCT 42 215 1160 Antisense
AATACTGGCTTCATCGTGATCCAAA 671 171 1175 Antisense
GTAACTCAATGTTCTGTGCCCTATT 45 463 1276 Antisense
GGAGACTGTTTCTACATTGCACACC 387 519 1354 Antisense
TTGCACACCGCAAGAAGTCCCAAAT 189 703 1370 Antisense
GGAATCTACTCGCCAATGACGTCAC 552 533 1441 Antisense
TAGACCGTATTCATGCATCTTGCCA 261 653 1481 Antisense
ACTCCGAAACCGACAATTACAGCCT 678 97 1505 Antisense
ACAGCCTTCAAAACACTTTCTTCAC 161 109 1523 Antisense
AATCCGCAACTACTTCTGGACTGTT 22 169 1572 Antisense
Sequence Source Affymetrix Proprietary Database