[Home] | [Total List]

[190338_at] Zinc finger, C2H2 type

Description T09F3.1 /REP_DB=WormBase Gene ID /WP=CE13519 /TR=Q17793 /GB=CAA88872.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 391.2
(3)
P 		221.4
(-3)
P 		280
(-0.9)
P 		262.9
(-1.5)
P 		170
B 328.3
(0.7)
P 		221.9
(-3)
P 		255.6
(-1.8)
P 		393.9
(3)
P 		172
C 340.5
(3)
P 		247.9
(-3)
P 		284.9
(-0.6)
P 		294.6
(0)
P 		93
avr 353.3
(3) 		230.4
(-3) 		273.5
(-0.9) 		317.1
(1.2) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 436.1
(3)
P 		205.1
(-2.7)
P 		319.3
(0.1)
P 		202.9
(-2.8)
P 		310.4
(-0.1)
P 		194.9
(-3)
P 		241
B 485.8
(3)
P 		440.1
(1.9)
P 		297.8
(-1.7)
P 		300.2
(-1.6)
P 		244.5
(-3)
P 		300
(-1.6)
P 		241
C 431.3
(2.3)
P 		470
(3)
P 		159.9
(-3)
P 		352.7
(0.7)
P 		216
(-1.9)
P 		223.1
(-1.8)
P 		310
avr 451.1
(3) 		371.7
(0.8) 		259
(-2.4) 		285.3
(-1.7) 		257
(-2.5) 		239.3
(-3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 142.4
(3)
P 		48.1
(-2.4)
P 		73.2
(-1)
P 		38.5
(-3)
P 		104
B 104.7
(3)
P 		54.8
(-3)
P 		59.2
(-2.5)
P 		83.9
(0.5)
P 		50
C 112.7
(3)
P 		71.3
(-0.9)
P 		99.3
(1.7)
P 		49.7
(-3)
P 		63
avr 119.9
(3) 		58.1
(-2.9) 		77.2
(-1.1) 		57.4
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 80.4
(1.3)
P 		72.9
(0.3)
P 		69.5
(-0.1)
P 		51.5
(-2.5)
P 		93.7
(3)
P 		47.5
(-3)
P 		46
B 169
(3)
P 		146.5
(1.6)
P 		72.3
(-3)
P 		79.5
(-2.6)
P 		99.4
(-1.3)
P 		111.9
(-0.5)
P 		97
C 159.9
(3)
P 		143.4
(2.2)
P 		40.7
(-3)
P 		70.9
(-1.5)
P 		69.9
(-1.5)
P 		74.7
(-1.3)
P 		119
avr 136.4
(3) 		120.9
(1.8) 		60.8
(-3) 		67.3
(-2.5) 		87.7
(-0.9) 		78
(-1.6) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2636
Sequence Type Exemplar sequence
Representative Public ID T09F3.1 NCBI
Target Description T09F3.1 /REP_DB=WormBase Gene ID /WP=CE13519 /TR=Q17793 /GB=CAA88872.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063834 NCBI Caenorhabditis elegans T09F3.1 (T09F3.1) mRNA, complete cds. 11/11 None
SNAP00000009656 ENSEMBL cdna:SNAP chromosome:CEL140:II:10386666:10387674:1 9/11 None
GENEFINDER00000009662 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10386541:10387791:1 10/11 None
T09F3.1 ENSEMBL cdna:known chromosome:CEL140:II:10385243:10388017:1 gene:T09F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10385259-10387671(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl T09F3.1
Entrez Gene 188340 Entrez gene
SwissProt Q17793 EMBL-EBI
WormBase CE35906 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88872 Hypothetical protein T09F3.1 [Caenorhabditis elegans] emb|CAA90104.2| Hypothetical protein T09F3.1 [Caenorhabditis elegans] ref|NP_496235.2| T09F3.1 [Caenorhabditis elegans] 1.0E-148
blast CAE59384 Hypothetical protein CBG02740 [Caenorhabditis briggsae] 1.0E-123
blast CAA88872 Hypothetical protein T09F3.1 [Caenorhabditis elegans] emb|CAA90104.2| Hypothetical protein T09F3.1 [Caenorhabditis elegans] ref|NP_496235.2| T09F3.1 [Caenorhabditis elegans] 9.0E-75
blast CAA88872 Hypothetical protein T09F3.1 [Caenorhabditis elegans] emb|CAA90104.2| Hypothetical protein T09F3.1 [Caenorhabditis elegans] ref|NP_496235.2| T09F3.1 [Caenorhabditis elegans] 1.0E-73
blast CAE59384 Hypothetical protein CBG02740 [Caenorhabditis briggsae] 1.0E-70
blast CAE59384 Hypothetical protein CBG02740 [Caenorhabditis briggsae] 1.0E-66
Sequence
Target Sequence 
>C. ELEGANS:190338_AT
gaggatcctgatatgtctgtagacgttgatgaagacctagaagatctcactctcagtcaa
gcacttgaactttttgatagggaaccacgtaccaagaaagcaaaagctgatgagccattt
ggagagctttatcagtgtcagttatgtaagaagagcatctcaaggcatggacaatacgcc
aatcttttgaatcatttgtcaaggcatgcaaggttacatgcatcgaagaaacaatattgt
tgtccaaaatgtggagccagcttcacaaggaggtacctagcatctactcacattaaggaa
gttcatggagagccgaagcttcagcctcatgattttgcagccgaactccgcgaggaatac
cgtcggcttcttgaaatgtgcttccctggagctgataatcgccggaaacagcaacaagca
gtcacacaggcaacaaaagattccattctcaatattctttccgatgatagtggagtttcc
gtcaacgattcttctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATCCTGATATGTCTGTAGACG 221 403 496 Antisense
TCTCACTCTCAGTCAAGCACTTGAA 308 613 540 Antisense
GGAGCCAGCTTCACAAGGAGGTACC 569 519 748 Antisense
GGTACCTAGCATCTACTCACATTAA 641 503 767 Antisense
CATGGAGAGCCGAAGCTTCAGCCTC 549 209 799 Antisense
TCAGCCTCATGATTTTGCAGCCGAA 591 623 816 Antisense
GAACTCCGCGAGGAATACCGTCGGC 485 343 838 Antisense
CTTCTTGAAATGTGCTTCCCTGGAG 452 219 862 Antisense
CTTCCCTGGAGCTGATAATCGCCGG 612 219 876 Antisense
GATTCCATTCTCAATATTCTTTCCG 617 433 934 Antisense
GTTTCCGTCAACGATTCTTCTGATT 517 451 970 Antisense
Sequence Source Affymetrix Proprietary Database