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[190337_s_at] ATP synthase B chain

Description F35G12.10 /REP_DB=WormBase Gene ID /WP=CE00968 /TR=Q20053 /GB=CAA86329.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATP synthase B chain
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 99      6grp_total > 96      4grp_total > 40      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 521.4
(-3)
P 		910.6
(1.4)
P 		1054.1
(3)
P 		732.8
(-0.6)
P 		533
B 469.1
(-3)
P 		926.3
(0.6)
P 		1221.2
(3)
P 		794.9
(-0.4)
P 		752
C 514.2
(-3)
P 		714.8
(-0.4)
P 		984.4
(3)
P 		693.3
(-0.7)
P 		470
avr 501.6
(-3) 		850.6
(0.6) 		1086.6
(3) 		740.3
(-0.6) 		585

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1900
1 2 3 4 5 6 range
A 472.3
(-3)
P 		508.7
(-2.9)
P 		829.5
(-1.9)
P 		920.9
(-1.6)
P 		1564
(0.5)
P 		2337.9
(3)
P 		1866
B 473.9
(-3)
P 		473.5
(-3)
P 		845.4
(-1.3)
P 		1074.7
(-0.3)
P 		1408.8
(1.2)
P 		1814
(3)
P 		1341
C 469.5
(-2.9)
P 		438.3
(-3)
P 		818.9
(-1.4)
P 		1003.6
(-0.6)
P 		1548.1
(1.7)
P 		1848.8
(3)
P 		1411
avr 471.9
(-3) 		473.5
(-3) 		831.3
(-1.6) 		999.7
(-0.9) 		1507
(1.1) 		2000.2
(3) 		1528
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 189.8
(-0.1)
P 		197.7
(0.2)
P 		275.6
(3)
P 		107.3
(-3)
P 		168
B 149.6
(-3)
P 		228.8
(0.6)
P 		283
(3)
P 		169.4
(-2.1)
P 		133
C 170.2
(-1.6)
P 		205.5
(-0.6)
P 		343.1
(3)
P 		116.9
(-3)
P 		226
avr 169.9
(-1.6) 		210.7
(-0.2) 		300.6
(3) 		131.2
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 87.1
(-3)
P 		180.9
(-1.8)
P 		180.7
(-1.8)
P 		233.5
(-1.2)
P 		471.9
(1.8)
P 		569.2
(3)
P 		482
B 164.9
(-2.9)
P 		157.6
(-3)
P 		205.3
(-2.4)
P 		284.7
(-1.5)
P 		572.4
(1.8)
P 		676.4
(3)
P 		519
C 174
(-2.5)
P 		133.7
(-3)
P 		208.4
(-2.1)
P 		201.8
(-2.2)
P 		500.9
(1.5)
P 		618.9
(3)
P 		485
avr 142
(-3) 		157.4
(-2.8) 		198.1
(-2.3) 		240
(-1.8) 		515.1
(1.7) 		621.5
(3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190337_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8059
Sequence Type Exemplar sequence
Representative Public ID F35G12.10 NCBI
Target Description F35G12.10 /REP_DB=WormBase Gene ID /WP=CE00968 /TR=Q20053 /GB=CAA86329.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATP synthase B chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065537 NCBI Caenorhabditis elegans ATP Synthase B homolog family member (asb-1) (asb-1) mRNA, complete cds. 11/11 None
SNAP00000042246 ENSEMBL cdna:SNAP chromosome:CEL140:III:4594628:4595786:-1 11/11 None
GENEFINDER00000042252 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4594628:4595786:-1 11/11 None
F35G12.10 ENSEMBL cdna:known chromosome:CEL140:III:4594508:4595786:-1 gene:F35G12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4594627-4595786(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase B chain
Gene Symbol asb-1
Ensembl F35G12.10
Entrez Gene 175605 Entrez gene
SwissProt Q20053 EMBL-EBI
WormBase CE00968 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86329 Hypothetical protein F35G12.10 [Caenorhabditis elegans] ref|NP_497938.1| ATP Synthase B homolog family member (asb-1) [Caenorhabditis elegans] 1.0E-171
blast CAE71174 Hypothetical protein CBG18031 [Caenorhabditis briggsae] 1.0E-153
blast CAE68600 Hypothetical protein CBG14472 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR008688 EMBL-EBI Mitochondrial ATP synthase B chain 2.3E-125
Sequence
Target Sequence 
>C. ELEGANS:190337_S_AT
cgtccaatgtacccaccaaagactcgtctcttgatgatgcccgattcgtggtttaccgca
ttccaaaaggttactggtacctctggtccatatcttttcttcggaggactctttgctttc
ctcgttaacaaggagttgtgggtgtttgaggagcaaggacatatgactgttggatggatt
cttttctatcttttggtttccagaaccgccggctataaaatcgatgctggtctttacaag
gactatcaggaacgcgttggtttcttcaaaggacttattcaagaagatttgaaggaagct
gttgatttccgcaaaacctctgccgctcaaaccgcttcatttgctgctctcaaggaaggc
atgccaacttctctcaaggattccatgcagctacagctggaggccgcttatagaaagaat
gttcaaaccatttccaatgagatcaagcgtcgcatcgagtatttgaaagagaccgaggag
acaaaggccagatttgagcgcgaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCCAATGTACCCACCAAAGACTC 181 245 304 Antisense
ACTCGTCTCTTGATGATGCCCGATT 267 99 325 Antisense
GATTCGTGGTTTACCGCATTCCAAA 11 433 346 Antisense
TTACTGGTACCTCTGGTCCATATCT 229 683 374 Antisense
TATCTTTTGGTTTCCAGAACCGCCG 463 659 490 Antisense
ATCAGGAACGCGTTGGTTTCTTCAA 526 29 548 Antisense
TGTTGATTTCCGCAAAACCTCTGCC 270 559 603 Antisense
AAGGAAGGCATGCCAACTTCTCTCA 363 161 655 Antisense
CAAGGATTCCATGCAGCTACAGCTG 674 183 678 Antisense
GCTACAGCTGGAGGCCGCTTATAGA 142 303 693 Antisense
AAAGGCCAGATTTGAGCGCGACCAA 685 119 786 Antisense
Sequence Source Affymetrix Proprietary Database