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[190336_at] GTP binding protein

Description E02H1.2 /REP_DB=WormBase Gene ID /WP=CE01537 /TR=SW:Q09523 /GB=CAA87384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP binding protein
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 81      6grp_total > 46      4grp_total > 57      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 228
(-3)
P 		277.6
(3)
P 		243
(-1.2)
P 		234.9
(-2.2)
P 		50
B 193.4
(-2.8)
P 		222.8
(-0.6)
P 		270.9
(3)
P 		190.4
(-3)
P 		81
C 204.7
(-0.9)
P 		252.2
(3)
P 		247.3
(2.6)
P 		179.8
(-3)
P 		72
avr 208.7
(-2.2) 		250.9
(2.7) 		253.7
(3) 		201.7
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 318.9
(3)
P 		214
(-2.9)
P 		230.3
(-2)
P 		232.4
(-1.8)
P 		211.8
(-3)
P 		212.3
(-3)
P 		107
B 231
(-2)
P 		267.9
(0.3)
P 		310.4
(3)
P 		227
(-2.2)
P 		214.5
(-3)
P 		273.4
(0.7)
P 		96
C 208.8
(-0.6)
P 		282.2
(2.1)
P 		144.8
(-3)
P 		308
(3)
P 		209
(-0.6)
P 		300.5
(2.7)
P 		163
avr 252.9
(1.9) 		254.7
(2.1) 		228.5
(-1) 		255.8
(2.2) 		211.8
(-3) 		262.1
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 83
(3)
P 		60.3
(0.2)
P 		63.5
(0.6)
P 		34.4
(-3)
P 		49
B 61.7
(2.7)
P 		55
(0.9)
P 		62.8
(3)
P 		40.6
(-3)
P 		22
C 67.8
(1)
P 		72.5
(1.5)
P 		86.2
(3)
P 		30.3
(-3)
P 		56
avr 70.8
(3) 		62.6
(1.6) 		70.8
(3) 		35.1
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 58.8
(-1)
P 		76.1
(3)
P 		50.2
(-3)
P 		58.9
(-1)
P 		63.9
(0.2)
P 		51.7
(-2.7)
P 		26
B 80.4
(-0.1)
P 		89.2
(1.2)
P 		75.4
(-0.8)
P 		60.1
(-3)
P 		87.1
(0.9)
P 		101.9
(3)
P 		42
C 77.4
(0.8)
P 		86.1
(1.6)
P 		36.9
(-3)
P 		61.9
(-0.6)
P 		67.6
(-0.1)
P 		100.6
(3)
P 		64
avr 72.2
(0.5) 		83.8
(2.8) 		54.2
(-3) 		60.3
(-1.8) 		72.9
(0.7) 		84.7
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3345
Sequence Type Exemplar sequence
Representative Public ID E02H1.2 NCBI
Target Description E02H1.2 /REP_DB=WormBase Gene ID /WP=CE01537 /TR=SW:Q09523 /GB=CAA87384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063659 NCBI Caenorhabditis elegans E02H1.2 (E02H1.2) mRNA, complete cds. 11/11 None
SNAP00000041919 ENSEMBL cdna:SNAP chromosome:CEL140:II:9588460:9589671:-1 9/11 None
E02H1.2 ENSEMBL cdna:known chromosome:CEL140:II:9588268:9589671:-1 gene:E02H1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041932 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9588264-9589668(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP binding protein
Ensembl E02H1.2
Entrez Gene 174508 Entrez gene
SwissProt Q09523 EMBL-EBI
WormBase CE01537 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265154_AT GTP-binding protein (ERG) at
CANINE:1588135_AT similar to Era G-protein-like 1 cfa
CANINE_2:CFA.11368.1.S1_AT similar to Era G-protein-like 1 cfa
CANINE_2:CFAAFFX.28738.1.S1_AT similar to Era G-protein-like 1 cfa
CANINE_2:CFAAFFX.28739.1.S1_S_AT similar to Era G-protein-like 1 cfa
DROSOPHILA_2:1630932_AT dm
DROSGENOME1:149812_AT dm
CHICKEN:GGA.129.1.S1_AT Era G-protein-like 1 (E. coli) gga
HU35KSUBA:T34378_S_AT Era G-protein-like 1 (E. coli) hs
HU35KSUBA:RC_AA287623_AT Era G-protein-like 1 (E. coli) hs
U133_X3P:HS.3426.0.S1_3P_A_AT Era G-protein-like 1 (E. coli) hs
HG-U133A_2:212087_S_AT Era G-protein-like 1 (E. coli) hs
HG-U133_PLUS_2:212087_S_AT Era G-protein-like 1 (E. coli) hs
HG-U133A:212087_S_AT Era G-protein-like 1 (E. coli) hs
HG-U95AV2:34379_AT Era G-protein-like 1 (E. coli) hs
MOE430A:1429806_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430A_2:1429806_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430_2:1429806_AT Era (G-protein)-like 1 (E. coli) mm
MOE430A:1460548_A_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430A_2:1460548_A_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430_2:1460548_A_AT Era (G-protein)-like 1 (E. coli) mm
MU11KSUBA:AA276699_AT Era (G-protein)-like 1 (E. coli) mm
MG-U74AV2:103859_AT Era (G-protein)-like 1 (E. coli) mm
MG-U74AV2:103858_AT Era (G-protein)-like 1 (E. coli) mm
MOE430A:1420519_A_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430A_2:1420519_A_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430_2:1420519_A_AT Era (G-protein)-like 1 (E. coli) mm
MOE430A:1433753_X_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430A_2:1433753_X_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430_2:1433753_X_AT Era (G-protein)-like 1 (E. coli) mm
MOE430A:1420520_X_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430A_2:1420520_X_AT Era (G-protein)-like 1 (E. coli) mm
MOUSE430_2:1420520_X_AT Era (G-protein)-like 1 (E. coli) mm
MOE430B:1458914_AT Era (G-protein)-like 1 (E. coli), mRNA (cDNA clone IMAGE:3993955) mm
MOUSE430_2:1458914_AT Era (G-protein)-like 1 (E. coli), mRNA (cDNA clone IMAGE:3993955) mm
MU19KSUBB:TC32096_AT Era (G-protein)-like 1 (E. coli), mRNA (cDNA clone IMAGE:3993955) mm
MU19KSUBC:TC38390_AT Era (G-protein)-like 1 (E. coli), mRNA (cDNA clone IMAGE:3993955) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87384 Hypothetical protein E02H1.2 [Caenorhabditis elegans] emb|CAA85330.1| Hypothetical protein E02H1.2 [Caenorhabditis elegans] ref|NP_496060.1| E02H1.2 [Caenorhabditis elegans] sp|Q09523|YQN2_CAEEL Hypothetical GTP-binding protein E02H1.2 in chromosome II 0.0
blast CAE57912 Hypothetical protein CBG00962 [Caenorhabditis briggsae] 0.0
blast CAE57912 Hypothetical protein CBG00962 [Caenorhabditis briggsae] 1.0E-164
blast AAF54886 CG7488-PA [Drosophila melanogaster] ref|NP_650248.1| CG7488-PA [Drosophila melanogaster] 2.0E-33
blast NP_989570 Era G-protein-like 1 [Gallus gallus] dbj|BAC06859.1| E. coli Ras-like protein homologue [Gallus gallus] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:190336_AT
aagcctgctcaaattggacgacttggaaaatcactctccacaaatattcaatcatcatct
tccttcaaaccatccgatgagaaatggcagagccaatttcgagagcttattcagaaaccc
acgtggaaatgcagttattctgagacacgttccttattccgtacgatttgtggatggtct
ggattcgaacgtgtcttcttcgtttcttcgttgaacggagagggtattgatgagttgaga
gatcatttgatgagcatctctccacagggagaatggaaaatgcaagatggaatgccaact
ggagagtctgcccaacaactttgcattgattcgatccgtgctgcagtgcttgacacaact
ccatccgatgtcgcgtacactgtacaaattcgaatttcagaatgggaagagcagggagaa
gttttgcaaattgttggagaaatacggtgccaaaagccaagagatggatccttgataatt
ggaaagggaggaaaacggatttcggagatcggacggcgagtcaatgagcatctacattca
ttattccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTGCTCAAATTGGACGACTTG 62 149 586 Antisense
TCATCTTCCTTCAAACCATCCGATG 349 621 640 Antisense
ATTCTGAGACACGTTCCTTATTCCG 287 11 722 Antisense
GGATGGTCTGGATTCGAACGTGTCT 171 515 757 Antisense
GTCTTCTTCGTTTCTTCGTTGAACG 226 321 778 Antisense
TTGATGAGCATCTCTCCACAGGGAG 30 701 832 Antisense
AGAGTCTGCCCAACAACTTTGCATT 182 69 888 Antisense
TTTGCATTGATTCGATCCGTGCTGC 698 661 905 Antisense
TGCAGTGCTTGACACAACTCCATCC 308 577 927 Antisense
GGACGGCGAGTCAATGAGCATCTAC 264 525 1096 Antisense
GAGCATCTACATTCATTATTCCAAA 440 389 1111 Antisense
Sequence Source Affymetrix Proprietary Database