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[190335_s_at] Ank repeat (2 domains)

Description C01H6.2 /REP_DB=WormBase Gene ID /WP=CE05185 /TR=Q17583 /GB=CAA95781.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ank repeat (2 domains)
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 71      6grp_total > 41      4grp_total > 55      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 317.8
(3)
P 		260.5
(-1.9)
P 		247.2
(-3)
P 		273.1
(-0.8)
P 		71
B 272.8
(3)
P 		231.5
(-0.1)
P 		217.9
(-1.1)
P 		192.9
(-3)
P 		80
C 324.5
(3)
P 		234
(-2.6)
P 		303.2
(1.7)
P 		226.7
(-3)
P 		98
avr 305
(3) 		242
(-2.1) 		256.1
(-1) 		230.9
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 317.1
(1.2)
P 		348.2
(1.9)
P 		383.8
(2.8)
P 		394.1
(3)
P 		253.5
(-0.3)
P 		140.4
(-3)
P 		254
B 345.7
(2.8)
P 		309.5
(1.8)
P 		352.1
(3)
P 		344.7
(2.8)
P 		284.5
(1.1)
P 		143.6
(-3)
P 		209
C 328.7
(0.9)
P 		318.7
(0.7)
P 		408
(2.5)
P 		432.5
(3)
P 		239.7
(-0.9)
P 		132.5
(-3)
P 		300
avr 330.5
(1.6) 		325.5
(1.5) 		381.3
(2.8) 		390.4
(3) 		259.2
(-0.1) 		138.8
(-3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 115.7
(3)
P 		56.6
(-1.7)
P 		64.6
(-1.1)
P 		40
(-3)
P 		76
B 87
(3)
P 		57.2
(-0.9)
P 		50.5
(-1.8)
P 		41.1
(-3)
P 		46
C 107.4
(3)
P 		67.3
(-0.5)
P 		105.7
(2.9)
P 		38.2
(-3)
P 		69
avr 103.4
(3) 		60.4
(-1.1) 		73.6
(0.2) 		39.8
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 58.5
(-1.4)
P 		123.8
(3)
P 		83.6
(0.3)
P 		100
(1.4)
P 		76.5
(-0.2)
P 		34.2
(-3)
P 		90
B 120.3
(3)
P 		103
(1.4)
P 		85.5
(-0.1)
P 		91.3
(0.4)
P 		115.6
(2.6)
P 		53.6
(-3)
P 		67
C 121.8
(3)
P 		97.2
(1.1)
P 		103.8
(1.6)
P 		87
(0.3)
P 		77.6
(-0.4)
P 		44.4
(-3)
P 		77
avr 100.2
(2.3) 		108
(3) 		91
(1.4) 		92.8
(1.6) 		89.9
(1.3) 		44.1
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190335_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.621
Sequence Type Exemplar sequence
Representative Public ID C01H6.2 NCBI
Target Description C01H6.2 /REP_DB=WormBase Gene ID /WP=CE05185 /TR=Q17583 /GB=CAA95781.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ank repeat (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059635 NCBI Caenorhabditis elegans C01H6.2 (C01H6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008126 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7212129:7215718:-1 11/11 None
SNAP00000008116 ENSEMBL cdna:SNAP chromosome:CEL140:I:7212722:7215718:-1 11/11 None
C01H6.2 ENSEMBL cdna:known chromosome:CEL140:I:7212705:7215848:-1 gene:C01H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7212652-7215649(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat (2 domains)
Ensembl C01H6.2
Entrez Gene 172459 Entrez gene
SwissProt Q17583 EMBL-EBI
WormBase CE36466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95781 Hypothetical protein C01H6.2 [Caenorhabditis elegans] ref|NP_492036.2| C01H6.2 [Caenorhabditis elegans] 0.0
blast CAE74253 Hypothetical protein CBG21942 [Caenorhabditis briggsae] 0.0
blast XP_419064 PREDICTED: similar to sterile alpha motif domain containing 6 [Gallus gallus] 2.0E-18
blast XP_419064 PREDICTED: similar to sterile alpha motif domain containing 6 [Gallus gallus] 5.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 9.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0043
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 0.13
Pfam IPR002110 EMBL-EBI Ankyrin 0.0020
Pfam IPR002110 EMBL-EBI Ankyrin 0.043
Sequence
Target Sequence 
>C. ELEGANS:190335_S_AT
gttttgctgtcttttgtttttctgatttctatggagaacgagaaaataacaaagctacaa
ttcccgattactacgataaagctcaagataatgcaaaacgttatgcatatctaagaatgg
acggtttggataaaaaaaatagtggaagacaagaaaatgtttcgaaattaatcccagttc
gtccacgaaaagatagtattgaaagagaatacagaaaacctcgtaatattgcattggtag
attcaccatctcaaagtcaaatgaggacaactccaagaatgcttaaaaagagagatactg
actatttttctgctcaagctggaagagcacgtgcttcttcaactagtttgcaagttccaa
ctgtaacggttacaaggcagaggcacgtaacttctccagtaatcgaagatatgatatgga
atcattttgttcgtcgtgggaagaatgaactgatgcgtgtactgcaagcagctgaaattg
ataaacacagtttcttctcgctacaacaaaaagatcttgaagcaatgaacagttacactc
ccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGCTGTCTTTTGTTTTTCTGA 219 449 1463 Antisense
AAGCTACAATTCCCGATTACTACGA 349 151 1514 Antisense
CGAAATTAATCCCAGTTCGTCCACG 512 251 1625 Antisense
GGTAGATTCACCATCTCAAAGTCAA 154 505 1698 Antisense
TACTGACTATTTTTCTGCTCAAGCT 155 645 1758 Antisense
GCAAGTTCCAACTGTAACGGTTACA 601 309 1812 Antisense
GAGGCACGTAACTTCTCCAGTAATC 624 403 1842 Antisense
GGAATCATTTTGTTCGTCGTGGGAA 338 531 1880 Antisense
ACTGATGCGTGTACTGCAAGCAGCT 311 95 1911 Antisense
AGTTTCTTCTCGCTACAACAAAAAG 61 51 1951 Antisense
GCAATGAACAGTTACACTCCCGAGA 543 321 1984 Antisense
Sequence Source Affymetrix Proprietary Database