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[190333_at] Zinc finger, C2H2 type

Description D1046.2 /REP_DB=WormBase Gene ID /WP=CE03095 /TR=Q18933 /GB=CAA92290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 29      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 231.2
(-0.5)
P 		252
(0.6)
P 		185.2
(-3)
P 		297.6
(3)
P 		112
B 238.4
(2.1)
P 		227.3
(-0.2)
P 		213.5
(-3)
P 		242.7
(3)
P 		29
C 344.2
(3)
P 		220.1
(-1.5)
P 		178
(-3)
P 		227.3
(-1.2)
P 		166
avr 271.3
(3) 		233.1
(0.1) 		192.2
(-3) 		255.9
(1.8) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 255.9
(-2.9)
P 		252.7
(-3)
P 		367.3
(1)
P 		331.7
(-0.2)
P 		341.5
(0.1)
P 		422.6
(3)
P 		170
B 240.6
(-3)
P 		270.6
(-2.2)
P 		319.3
(-0.8)
P 		277.5
(-2)
P 		373.9
(0.7)
P 		456.6
(3)
P 		216
C 273.8
(-1.6)
P 		284.2
(-1.2)
P 		230.4
(-3)
P 		363.9
(1.4)
P 		377
(1.8)
P 		413.8
(3)
P 		183
avr 256.8
(-3) 		269.2
(-2.6) 		305.7
(-1.3) 		324.4
(-0.7) 		364.1
(0.7) 		431
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 84.2
(3)
P 		54.7
(-1.4)
P 		48.4
(-2.3)
P 		43.6
(-3)
P 		41
B 76
(3)
P 		56.1
(-1.5)
P 		49.5
(-3)
P 		51.7
(-2.5)
P 		27
C 113.9
(3)
P 		63.3
(-1)
P 		62
(-1.1)
P 		38.3
(-3)
P 		76
avr 91.4
(3) 		58
(-1.3) 		53.3
(-1.9) 		44.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 47.2
(-3)
P 		89.9
(1.6)
P 		80
(0.5)
P 		84.1
(1)
P 		103.1
(3)
P 		102.9
(3)
P 		56
B 83.7
(-2.4)
P 		90.1
(-2)
P 		77.5
(-2.8)
P 		73.5
(-3)
P 		151.9
(1.9)
P 		170.3
(3)
P 		97
C 101.5
(0.2)
P 		86.7
(-0.9)
P 		58.6
(-3)
P 		73.2
(-1.9)
P 		122
(1.8)
P 		138.5
(3)
P 		80
avr 77.5
(-2.5) 		88.9
(-1.4) 		72
(-3) 		76.9
(-2.5) 		125.7
(1.9) 		137.2
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10035
Sequence Type Exemplar sequence
Representative Public ID D1046.2 NCBI
Target Description D1046.2 /REP_DB=WormBase Gene ID /WP=CE03095 /TR=Q18933 /GB=CAA92290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069149 NCBI Caenorhabditis elegans D1046.2 (D1046.2) mRNA, complete cds. 11/11 None
SNAP00000023081 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8924550:8926041:-1 11/11 None
GENEFINDER00000023091 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8924550:8926041:-1 11/11 None
D1046.2 ENSEMBL cdna:known chromosome:CEL140:IV:8924156:8926049:-1 gene:D1046.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8924555-8925903(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl D1046.2
Entrez Gene 183908 Entrez gene
SwissProt Q18933 EMBL-EBI
WormBase CE32844 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92290 Hypothetical protein D1046.2 [Caenorhabditis elegans] ref|NP_501550.2| D1046.2 [Caenorhabditis elegans] 0.0
blast CAE74069 Hypothetical protein CBG21722 [Caenorhabditis briggsae] 1.0E-113
blast CAE74069 Hypothetical protein CBG21722 [Caenorhabditis briggsae] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:190333_AT
tttgctattcggacaatgctctataaatgcctgttttcaaattctcgagggcaatcgaaa
ggcagaagatgtgagcagtgtcctgcatttattaaatgttgtatgagaaatcatgggcaa
tacgaagttgtcgcctgtttcgggcatcttggacatgaacacccaactgaaaccgagatt
gctagacagatgagaatcgagaaatatcgagagattgacgcacttcaagtacgagaatct
cgaatgcataatcaacatcacatgaatgttcgcccaaagcaaataattgttgatcaatac
ggacaccctactcacccaaacgatgaaatgatgattctgatgccggtaggagaagaagtc
gttgaagaagatgcattcacaagcgtcgtagtagatgacgctgatgatgagatagtaggg
ccacgtgctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCTATTCGGACAATGCTCTATA 177 667 625 Antisense
GCCTGTTTTCAAATTCTCGAGGGCA 416 283 653 Antisense
GCAATACGAAGTTGTCGCCTGTTTC 166 323 741 Antisense
CCTGTTTCGGGCATCTTGGACATGA 547 265 758 Antisense
GGACATGAACACCCAACTGAAACCG 416 525 775 Antisense
ATCACATGAATGTTCGCCCAAAGCA 268 27 881 Antisense
GTTGATCAATACGGACACCCTACTC 601 435 913 Antisense
ACCCTACTCACCCAAACGATGAAAT 594 85 929 Antisense
ATGATGATTCTGATGCCGGTAGGAG 254 43 952 Antisense
AGATGCATTCACAAGCGTCGTAGTA 603 65 993 Antisense
GAGATAGTAGGGCCACGTGCTCAAC 514 395 1033 Antisense
Sequence Source Affymetrix Proprietary Database