[Home] | [Total List]

[190332_s_at] myosin like

Description F46C3.3 /REP_DB=WormBase Gene ID /WP=CE18696 /GEN=hum-4 /TR=Q20456 /GB=CAA91469.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=myosin like
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 41      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 638.4
(1.9)
P 		715.2
(3)
P 		652.8
(2.1)
P 		289.9
(-3)
P 		425
B 726.9
(3)
P 		674.5
(2.2)
P 		674.5
(2.2)
P 		309
(-3)
P 		418
C 687.3
(2.6)
P 		716.1
(3)
P 		693.7
(2.7)
P 		316
(-3)
P 		400
avr 684.2
(2.7) 		701.9
(3) 		673.7
(2.6) 		305
(-3) 		397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 787.3
(1.2)
P 		971.1
(3)
P 		515.1
(-1.6)
P 		617.2
(-0.5)
P 		525.5
(-1.4)
P 		370.1
(-3)
P 		601
B 627.1
(1.3)
P 		738.3
(3)
P 		459.8
(-1.3)
P 		614.3
(1.1)
P 		488.3
(-0.8)
P 		346.4
(-3)
P 		392
C 706.6
(2.2)
P 		740.9
(2.7)
P 		763.2
(3)
P 		696.4
(2)
P 		540
(-0.3)
P 		359.1
(-3)
P 		404
avr 707
(1.6) 		816.8
(3) 		579.4
(-0.1) 		642.6
(0.7) 		517.9
(-0.9) 		358.5
(-3) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 232.4
(3)
P 		155.3
(0.6)
P 		170.7
(1.1)
P 		42.4
(-3)
P 		190
B 231.8
(3)
P 		166.6
(0.6)
P 		156.3
(0.3)
P 		65.8
(-3)
P 		166
C 227.5
(2.5)
P 		205.9
(1.9)
P 		241.8
(3)
P 		53.3
(-3)
P 		189
avr 230.6
(3) 		175.9
(1.1) 		189.6
(1.6) 		53.8
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 145.1
(-1.7)
P 		345.4
(3)
P 		112.2
(-2.5)
P 		156.5
(-1.4)
P 		158.6
(-1.4)
P 		90.1
(-3)
P 		255
B 218.2
(1.8)
P 		245.7
(3)
P 		111.6
(-3)
P 		162.7
(-0.7)
P 		198.4
(0.9)
P 		129.2
(-2.2)
P 		134
C 261.9
(3)
P 		226.1
(1.5)
P 		194.2
(0.1)
P 		140
(-2.2)
P 		174.7
(-0.7)
P 		120.2
(-3)
P 		142
avr 208.4
(0.6) 		272.4
(3) 		139.3
(-2) 		153.1
(-1.5) 		177.2
(-0.6) 		113.2
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190332_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16504
Sequence Type Exemplar sequence
Representative Public ID F46C3.3 NCBI
Target Description F46C3.3 /REP_DB=WormBase Gene ID /WP=CE18696 /GEN=hum-4 /TR=Q20456 /GB=CAA91469.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=myosin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077513 NCBI Caenorhabditis elegans Heavy chain, Unconventional Myosin family member (hum-4) (hum-4) mRNA, complete cds. 11/11 None
F46C3.3 ENSEMBL cdna:known chromosome:CEL140:X:11420413:11437536:-1 gene:F46C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001999 8/11 Cross Hyb Matching Probes None
SNAP00000001994 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11420666-11437536(-) 99.86 100.0
Public Domain and Genome References
Gene Title myosin like
Gene Symbol hum-4
Ensembl F46C3.3
Entrez Gene 181335 Entrez gene
SwissProt Q20456 EMBL-EBI
WormBase CE31518 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
16459 myosin inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
3779 actin binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91469 Hypothetical protein F46C3.3 [Caenorhabditis elegans] ref|NP_509914.2| Heavy chain, Unconventional Myosin family member (hum-4) [Caenorhabditis elegans] 0.0
blast CAE70637 Hypothetical protein CBG17336 [Caenorhabditis briggsae] 0.0
blast XP_391992 PREDICTED: similar to ENSANGP00000003748 [Apis mellifera] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000857 EMBL-EBI Core domain in kinesin and myosin motor 6.1E-52
Pfam IPR000857 EMBL-EBI Core domain in kinesin and myosin motor 9.2E-58
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.4E-4
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 2.4E-46
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 6.9E-8
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 3.9E-7
Sequence
Target Sequence 
>C. ELEGANS:190332_S_AT
atcgacgattatctgcgcggatcactcatttcgaccaactcgctaggccaattgacagct
gccacaacagaggagattatcaaattagccgcctacttgttccttcttctccccgataat
ccaaagggacttaatgcaaagacactgccacaaattgtccctaaaagcgtcatcgaacca
aagcatcgtcaccaggaagagatggtgacaagaataagtcgccaactaaaaatgttcggc
ggtcgaatgagaccggcagaggccaagtctcatttcttagaattgttgtcaacatggcct
acgttcggtgttctgcactatcgactaaagtcagttgttgaaaatgggcatcaacttccg
gaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACGATTATCTGCGCGGATCAC 439 35 7816 Antisense
GCTAGGCCAATTGACAGCTGCCACA 447 301 7857 Antisense
ATCAAATTAGCCGCCTACTTGTTCC 419 25 7894 Antisense
TTCTTCTCCCCGATAATCCAAAGGG 572 673 7919 Antisense
AAGACACTGCCACAAATTGTCCCTA 87 153 7954 Antisense
ATTGTCCCTAAAAGCGTCATCGAAC 348 3 7969 Antisense
GTCATCGAACCAAAGCATCGTCACC 364 467 7984 Antisense
GGCAGAGGCCAAGTCTCATTTCTTA 666 533 8070 Antisense
TCAACATGGCCTACGTTCGGTGTTC 695 627 8104 Antisense
GTTCGGTGTTCTGCACTATCGACTA 278 443 8118 Antisense
AAAATGGGCATCAACTTCCGGAAGT 231 131 8156 Antisense
Sequence Source Affymetrix Proprietary Database