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[190328_s_at] Zinc finger, C2H2 type

Description W04D2.4 /REP_DB=WormBase Gene ID /WP=CE06541 /TR=Q23159 /GB=CAA99942.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 839.5
(3)
P 		756
(-3)
P 		773.9
(-1.7)
P 		779.3
(-1.3)
P 		84
B 935
(3)
P 		769.1
(-2.7)
P 		761.1
(-3)
P 		828.2
(-0.7)
P 		174
C 934.4
(3)
P 		750.2
(-1.9)
P 		786.9
(-0.9)
P 		708.9
(-3)
P 		226
avr 903
(3) 		758.4
(-3) 		774
(-2.4) 		772.1
(-2.4) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 885.8
(-2.3)
P 		795.1
(-3)
P 		829.6
(-2.7)
P 		876.6
(-2.3)
P 		1111.9
(-0.4)
P 		1525.7
(3)
P 		731
B 855.1
(-2.5)
P 		792.6
(-3)
P 		1141.8
(0)
P 		977.1
(-1.4)
P 		999.1
(-1.2)
P 		1490.6
(3)
P 		698
C 808.6
(-3)
P 		809.6
(-3)
P 		883.4
(-2.4)
P 		996.7
(-1.6)
P 		934
(-2.1)
P 		1618.4
(3)
P 		810
avr 849.8
(-2.6) 		799.1
(-3) 		951.6
(-1.8) 		950.1
(-1.8) 		1015
(-1.3) 		1544.9
(3) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 305.7
(3)
P 		164.1
(-1.4)
P 		202.3
(-0.2)
P 		114.1
(-3)
P 		192
B 298.2
(3)
P 		189.9
(-2.3)
P 		176.4
(-3)
P 		176.5
(-3)
P 		122
C 309.3
(3)
P 		215.7
(0)
P 		274.3
(1.9)
P 		119.5
(-3)
P 		190
avr 304.4
(3) 		189.9
(-1.1) 		217.7
(-0.1) 		136.7
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 163.3
(-3)
P 		282.8
(0.4)
P 		180.7
(-2.5)
P 		222.3
(-1.3)
P 		335.5
(2)
P 		371.5
(3)
P 		208
B 297.5
(-2.2)
P 		263.8
(-2.9)
P 		277.3
(-2.6)
P 		258.8
(-3)
P 		405.9
(-0)
P 		555.8
(3)
P 		297
C 299.7
(-1.3)
P 		247
(-2.2)
P 		224.8
(-2.6)
P 		200.4
(-3)
P 		302.2
(-1.2)
P 		541.8
(3)
P 		341
avr 253.5
(-2.4) 		264.5
(-2.1) 		227.6
(-3) 		227.2
(-3) 		347.9
(-0.2) 		489.7
(3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190328_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12720
Sequence Type Exemplar sequence
Representative Public ID W04D2.4 NCBI
Target Description W04D2.4 /REP_DB=WormBase Gene ID /WP=CE06541 /TR=Q23159 /GB=CAA99942.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073731 NCBI Caenorhabditis elegans W04D2.4 (W04D2.4) mRNA, complete cds. 11/11 None
SNAP00000021798 ENSEMBL cdna:SNAP chromosome:CEL140:V:12497421:12500342:-1 11/11 None
GENEFINDER00000021803 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12497342:12500342:-1 11/11 None
W04D2.4 ENSEMBL cdna:known chromosome:CEL140:V:12497326:12500343:-1 gene:W04D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12497420-12500342(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl W04D2.4
Entrez Gene 179712 Entrez gene
SwissProt Q23159 EMBL-EBI
WormBase CE06541 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99942 Hypothetical protein W04D2.4 [Caenorhabditis elegans] ref|NP_506132.1| W04D2.4 [Caenorhabditis elegans] 0.0
blast CAE75500 Hypothetical protein CBG23509 [Caenorhabditis briggsae] 1.0E-177
blast CAE75500 Hypothetical protein CBG23509 [Caenorhabditis briggsae] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:190328_S_AT
tcgatgacagtcttcagcttcaccatcacagacatcttcaaaatgaccatcatcatctgt
caaccaggcatcaacttgaagactctgatcaatcaggaccttctaatgctgttgatcgat
ttcttgatacgcacaaagttgataatttgaatctattgcttgaagaagttgaggcgttca
aacatacggttttgaaacgcgccgaccagatttcgccagccaatatgaaatctcttctca
tccgctttcaaactcttcatcactcggtaatggagaaggatccaggaatgccatcaagct
cgtcgtctacagttttccctactcggagcaaatatcaatataggcctggaaaaggtttgg
aaagagcagaacaagattatctgtcacgtggaaatggagatatcaccctacagccaatcg
aagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATGACAGTCTTCAGCTTCACCA 322 603 1388 Antisense
ATCATCATCTGTCAACCAGGCATCA 116 31 1436 Antisense
AGGACCTTCTAATGCTGTTGATCGA 614 53 1482 Antisense
TTTGAAACGCGCCGACCAGATTTCG 354 665 1578 Antisense
ACCAGATTTCGCCAGCCAATATGAA 625 85 1592 Antisense
ATATGAAATCTCTTCTCATCCGCTT 364 21 1610 Antisense
AACTCTTCATCACTCGGTAATGGAG 542 137 1638 Antisense
TCCAGGAATGCCATCAAGCTCGTCG 272 589 1668 Antisense
CAGTTTTCCCTACTCGGAGCAAATA 495 207 1697 Antisense
GAAATGGAGATATCACCCTACAGCC 371 361 1778 Antisense
TCACCCTACAGCCAATCGAAGACGA 321 627 1790 Antisense
Sequence Source Affymetrix Proprietary Database