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[190327_at] Glutamate receptor

Description T25E4.2 /REP_DB=WormBase Gene ID /WP=CE02063 /TR=SW:Q10015 /GB=AAC46731.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutamate receptor
Cluster 6grp_total > 08      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.9
(-3)
A 		3.5
(-1.3)
A 		2.4
(-2.5)
A 		7.7
(3)
A 		6
B 12.9
(3)
A 		6.1
(-0.7)
A 		2
(-3)
A 		5.5
(-1.1)
A 		11
C 2.7
(-1.4)
A 		4
(2)
A 		2.1
(-3)
A 		4.4
(3)
A 		2
avr 5.8
(2.8) 		4.5
(0.7) 		2.2
(-3) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.5
(1.9)
A 		2.9
(-2.5)
A 		9.4
(1.9)
A 		2.8
(-2.6)
A 		2.2
(-3)
A 		11.1
(3)
A 		9
B 3.2
(-2.2)
A 		3.4
(-2)
A 		8.3
(2.5)
A 		8.8
(3)
A 		2.3
(-3)
A 		2.4
(-2.9)
A 		7
C 16.8
(3)
A 		3
(-2.5)
A 		2.6
(-2.6)
A 		2.9
(-2.5)
A 		6.3
(-1.2)
A 		1.7
(-3)
A 		15
avr 9.8
(3) 		3.1
(-3) 		6.8
(0.3) 		4.8
(-1.5) 		3.6
(-2.6) 		5.1
(-1.2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(-1.8)
A 		0.8
(-0.6)
A 		0.6
(-3)
A 		1.1
(3)
A 		1
B 4.1
(3)
A 		1.5
(-1.3)
A 		0.5
(-3)
A 		1.2
(-1.8)
A 		4
C 0.9
(-0.6)
A 		1.2
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
avr 1.9
(3) 		1.2
(-0.2) 		0.6
(-3) 		1
(-1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.8
(0.3)
A 		1
(-2.1)
A 		2.1
(1.2)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2.7
(3)
A 		2
B 1.1
(-2.1)
A 		1.1
(-2.1)
A 		2
(1.7)
A 		2.3
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
C 6.2
(3)
A 		0.9
(-2.7)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		2.1
(-1.4)
A 		0.6
(-3)
A 		6
avr 3
(3) 		1
(-3) 		1.6
(-1.2) 		1.2
(-2.4) 		1.2
(-2.4) 		1.4
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4887
Sequence Type Exemplar sequence
Representative Public ID T25E4.2 NCBI
Target Description T25E4.2 /REP_DB=WormBase Gene ID /WP=CE02063 /TR=SW:Q10015 /GB=AAC46731.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutamate receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062680 NCBI Caenorhabditis elegans T25E4.2 (T25E4.2) mRNA, complete cds. 11/11 None
T25E4.2 ENSEMBL cdna:known chromosome:CEL140:II:5580414:5582379:-1 gene:T25E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5580411-5582377(-) 100.0 100.0
Public Domain and Genome References
Gene Title Glutamate receptor
Ensembl T25E4.2
Entrez Gene 188897 Entrez gene
SwissProt Q10015 EMBL-EBI
WormBase CE02063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46731 Hypothetical protein T25E4.2 [Caenorhabditis elegans] ref|NP_495081.1| T25E4.2 [Caenorhabditis elegans] sp|Q10015|YR02_CAEEL Hypothetical protein T25E4.2 in chromosome II 0.0
blast CAE59142 Hypothetical protein CBG02446 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495081.1 2 127-149,175-197
T25E4.2 2 127-149,175-197
Sequence
Target Sequence 
>C. ELEGANS:190327_AT
ttttcttctactatctcaccatagaggaacaatattcaatacattagatggtgtcctgga
agctgctgaacacaaaggttggactcttgtaatacaagaaagaggatatactccatatct
ctactgtaatccttcgcagtgtgcaagattggatagactgaaatcgaggttccgctttat
ttctttgagccttacagattgtagctttttgtttagaataaacttcattggagctgatga
cgatgcaaacttactgttaggacaagacaaacacgttggtttctctgcattggctagtga
tctcgctgaaactgacatcacatattttgattaccactccaaaattttatttgtaagaga
caaaataatggctcccgaatatttggcatacgctgtgaataaaaacgtgaaaggcctccg
tgagaagtttaatagagctgttgcctacactaaaagtgggtatggaactgtaagatctcg
atatatagcttcatttccgtcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTCTACTATCTCACCATAGA 128 677 621 Antisense
GATGGTGTCCTGGAAGCTGCTGAAC 10 409 667 Antisense
ACTCCATATCTCTACTGTAATCCTT 433 99 730 Antisense
GTAATCCTTCGCAGTGTGCAAGATT 586 461 746 Antisense
TAGACTGAAATCGAGGTTCCGCTTT 662 647 774 Antisense
GGTTCCGCTTTATTTCTTTGAGCCT 675 505 788 Antisense
AAACACGTTGGTTTCTCTGCATTGG 501 129 889 Antisense
CTGCATTGGCTAGTGATCTCGCTGA 455 235 905 Antisense
TGGCTCCCGAATATTTGGCATACGC 337 543 989 Antisense
AATAGAGCTGTTGCCTACACTAAAA 386 173 1051 Antisense
GATATATAGCTTCATTTCCGTCGTA 268 421 1100 Antisense
Sequence Source Affymetrix Proprietary Database